Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 5049227..5049894 Replicon chromosome
Accession NZ_CP023662
Organism Xanthomonas citri pv. citri strain Xcc49

Toxin (Protein)


Gene name vapC Uniprot ID M4U0C6
Locus tag CPA10_RS22800 Protein ID WP_005916679.1
Coordinates 5049478..5049894 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4U000
Locus tag CPA10_RS22795 Protein ID WP_005916676.1
Coordinates 5049227..5049481 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPA10_RS22770 5045349..5045568 + 220 Protein_4201 RNA 2'-phosphotransferase -
CPA10_RS22775 5045725..5046990 + 1266 WP_015463799.1 cardiolipin synthase B -
CPA10_RS22780 5047016..5047543 - 528 WP_005916668.1 hypothetical protein -
CPA10_RS22785 5047782..5047988 + 207 WP_003489327.1 hypothetical protein -
CPA10_RS22790 5047975..5049081 + 1107 WP_005916674.1 type II toxin-antitoxin system RelE/ParE family toxin -
CPA10_RS22795 5049227..5049481 + 255 WP_005916676.1 Arc family DNA-binding protein Antitoxin
CPA10_RS22800 5049478..5049894 + 417 WP_005916679.1 type II toxin-antitoxin system VapC family toxin Toxin
CPA10_RS22805 5050016..5050288 - 273 WP_129545227.1 hypothetical protein -
CPA10_RS22810 5050347..5050559 - 213 WP_015472901.1 hypothetical protein -
CPA10_RS22815 5050816..5052435 + 1620 WP_015463800.1 hypothetical protein -
CPA10_RS22820 5052539..5052937 - 399 WP_004429277.1 DUF2384 domain-containing protein -
CPA10_RS22825 5053253..5053684 + 432 WP_005922907.1 hypothetical protein -
CPA10_RS22830 5053713..5054039 - 327 Protein_4213 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-39)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14795.09 Da        Isoelectric Point: 5.6920

>T85844 WP_005916679.1 NZ_CP023662:5049478-5049894 [Xanthomonas citri pv. citri]
VILLDTNVISELWRPQPNPQVVAWIDAQAVETLFLSVVTVAELRFGIAVMPKGRKRSTLHARLEGEVLPLFDGRLLAFDL
DASHAFAALASKARTAGLTLGRADAYIAATAAAQGLTVATRDTAPFEAMALDVINPWS

Download         Length: 417 bp

>T85844 NZ_CP023662:5049478-5049894 [Xanthomonas citri pv. citri]
GTGATCCTGCTCGATACCAATGTCATCTCCGAACTTTGGCGGCCTCAGCCTAATCCGCAGGTCGTCGCCTGGATCGATGC
ACAAGCTGTCGAGACACTGTTCCTGTCGGTCGTGACGGTGGCTGAACTCCGTTTCGGTATTGCCGTGATGCCCAAGGGCC
GAAAGCGATCCACCTTGCATGCTCGGTTGGAGGGCGAGGTATTGCCACTGTTCGACGGGCGCCTGCTCGCATTCGATCTG
GATGCATCACACGCATTTGCGGCGCTTGCATCGAAAGCCAGAACCGCAGGACTCACACTCGGGCGCGCCGATGCCTACAT
CGCTGCAACAGCAGCCGCGCAAGGATTGACCGTTGCCACTCGCGACACGGCACCATTCGAGGCGATGGCGTTAGACGTCA
TTAACCCTTGGAGTTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 8996.53 Da        Isoelectric Point: 11.3362

>AT85844 WP_005916676.1 NZ_CP023662:5049227-5049481 [Xanthomonas citri pv. citri]
MPSFTVRNIPDDVHRAIRARAALHGRSTEAEIRAILELAAKPADRVKLGSLLVSIGRDAGLTAKEANAFDKLRGKAAIKP
IGLK

Download         Length: 255 bp

>AT85844 NZ_CP023662:5049227-5049481 [Xanthomonas citri pv. citri]
ATGCCTTCTTTCACCGTCCGCAATATCCCAGACGACGTGCATCGCGCGATCCGCGCGCGGGCTGCACTTCATGGCCGCAG
CACCGAAGCGGAGATCCGCGCAATCCTTGAATTGGCGGCCAAACCCGCAGACCGGGTCAAACTCGGCTCACTGCTGGTGA
GCATCGGCCGCGACGCCGGCCTGACCGCAAAAGAGGCCAATGCCTTCGACAAGCTGCGCGGCAAGGCGGCGATCAAGCCG
ATCGGTCTGAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB M4U0C6

Antitoxin

Source ID Structure
AlphaFold DB A0A828YKJ0

References