85730

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 3182861..3183548 Replicon chromosome
Accession NZ_CP023639
Organism Mycobacterium tuberculosis strain TBV4768

Toxin (Protein)


Gene name vapC Uniprot ID P65044
Locus tag CP496_RS15685 Protein ID WP_003414624.1
Coordinates 3183105..3183548 (+) Length 148 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TFH0
Locus tag CP496_RS15680 Protein ID WP_003414620.1
Coordinates 3182861..3183118 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP496_RS15660 3178181..3179035 - 855 WP_003899516.1 GNAT family N-acetyltransferase -
CP496_RS15665 3179091..3180254 - 1164 WP_003899517.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
CP496_RS15670 3180271..3181485 - 1215 WP_003414610.1 zinc metalloprotease Rip -
CP496_RS15675 3181493..3182734 - 1242 WP_003414613.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
CP496_RS15680 3182861..3183118 + 258 WP_003414620.1 ribbon-helix-helix domain-containing protein Antitoxin
CP496_RS15685 3183105..3183548 + 444 WP_003414624.1 type II toxin-antitoxin system VapC family toxin Toxin
CP496_RS15690 3183628..3184290 + 663 WP_003414630.1 cell surface glycolipoprotein Mpt83 -
CP496_RS15695 3184386..3184577 + 192 WP_003414632.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
CP496_RS15700 3184909..3186657 + 1749 WP_003912869.1 cytochrome c biogenesis protein DipZ -
CP496_RS15705 3186753..3187334 + 582 WP_003414644.1 fasciclin domain-containing protein -
CP496_RS15710 3187434..3187700 + 267 WP_015456449.1 DUF2631 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-142)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 148 a.a.        Molecular weight: 16595.72 Da        Isoelectric Point: 6.4890

>T85730 WP_003414624.1 NZ_CP023639:3183105-3183548 [Mycobacterium tuberculosis]
MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPTSPQDAWQAVDALLAAPAAM
RLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNATWLSADRGFARFRRLRWRHPLDGQTHL

Download         Length: 444 bp

>T85730 NZ_CP023639:3183105-3183548 [Mycobacterium tuberculosis]
ATGCTGTGCGTTGATGTCAACGTGCTCGTTTACGCGCATCGGGCAGACCTACGGGAGCACGCGGACTATCGGGGTTTGCT
TGAGCGGCTGGCCAACGATGACGAGCCGCTGGGTCTACCAGATAGCGTGCTCGCCGGCTTCATCCGGGTGGTTACCAACC
GCCGCGTCTTCACCGAGCCGACGAGCCCACAGGACGCATGGCAGGCAGTCGACGCCCTACTCGCGGCACCCGCAGCCATG
CGACTTCGGCCTGGCGAGCGCCACTGGATGGCCTTTCGGCAGTTAGCGTCCGATGTTGATGCGAACGGCAACGACATTGC
GGACGCGCACCTGGCCGCCTACGCGCTAGAGAACAACGCAACCTGGTTGAGCGCCGACCGCGGCTTTGCCCGTTTCCGTC
GACTGCGCTGGCGTCATCCGTTGGACGGTCAGACCCATCTATAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9013.22 Da        Isoelectric Point: 10.8344

>AT85730 WP_003414620.1 NZ_CP023639:3182861-3183118 [Mycobacterium tuberculosis]
VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVS
VDAVR

Download         Length: 258 bp

>AT85730 NZ_CP023639:3182861-3183118 [Mycobacterium tuberculosis]
GTGCGCACGACGATCCGTATCGATGACGAGCTGTACCGCGAGGTGAAAGCAAAGGCCGCTCGTTCCGGGCGTACCGTGGC
CGCGGTTCTTGAAGATGCGGTGCGGCGTGGTCTCAACCCGCCTAAGCCGCAGGCCGCCGGCCGTTATCGAGTCCAGCCGT
CGGGTAAGGGCGGCCTGCGGCCCGGTGTCGATCTATCGTCCAACGCCGCACTTGCCGAAGCGATGAACGACGGCGTGTCG
GTCGATGCTGTGCGTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7VWO

Antitoxin

Source ID Structure
AlphaFold DB G0TFH0

References