Detailed information of TA system TA085250

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): Rv0298-Rv0299/-
• Location: 363210..363736
• Replicon: chromosome
• Accession: NZ_CP023632
• Organism: Mycobacterium tuberculosis strain TBDM2189

Toxin (Protein)

• Gene name: Rv0299
• Uniprot ID: -
• Locus tag: CP489_RS01610
• Protein ID: WP_003401560.1
• Coordinates: 363434..363736 (+)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: Rv0298
• Uniprot ID: -
• Locus tag: CP489_RS01605
• Protein ID: WP_031658821.1
• Coordinates: 363210..363437 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CP489_RS01590	358937..359740	-	804	WP_003401540.1	hypothetical protein	-
CP489_RS01595	359750..361147	-	1398	WP_003401544.1	sulfatase	-
CP489_RS01600	361326..363067	+	1742	Protein_310	PE family protein	-
CP489_RS01605	363210..363437	+	228	WP_031658821.1	ribbon-helix-helix protein, CopG family	Antitoxin
CP489_RS01610	363434..363736	+	303	WP_003401560.1	toxin-antitoxin system toxin	Toxin
CP489_RS01615	363784..364005	+	222	WP_003401563.1	type II toxin-antitoxin system antitoxin VapB2	-
CP489_RS01620	364002..364427	+	426	WP_003401566.1	PIN domain nuclease	-
CP489_RS01625	364563..365195	+	633	WP_003401571.1	TetR/AcrR family transcriptional regulator	-
CP489_RS01630	365192..366100	+	909	WP_003900117.1	SDR family NAD(P)-dependent oxidoreductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Ribbon-helix-helix protein, CopG (6-41)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 10442.16 Da
• Isoelectric Point: 4.9609

>T85250 WP_003401560.1 NZ_CP023632:363434-363736 [Mycobacterium tuberculosis]
MIAPGDIAPRRDSEHELYVAVLSNALHRAADTGRVITCPFIPGRVPEDLLAMVVAVEQPNGTLLPELVQWLHVAALGAPL
GNAGVAALREAASVVTALLC

Nucleotide

• Length: 303 bp

>T85250 NZ_CP023632:363434-363736 [Mycobacterium tuberculosis]
TTGATCGCTCCCGGCGACATCGCGCCGCGCCGCGACAGTGAACACGAGCTCTACGTCGCCGTCTTGTCCAACGCGCTCCA
TCGGGCCGCGGACACCGGACGGGTGATCACCTGCCCATTCATTCCGGGCCGGGTCCCCGAGGATCTCTTGGCGATGGTGG
TGGCGGTCGAGCAACCCAACGGCACGCTGCTGCCGGAACTCGTGCAGTGGCTTCATGTTGCCGCGCTCGGTGCGCCACTC
GGCAACGCGGGCGTGGCCGCCCTACGCGAGGCTGCCTCGGTCGTGACAGCTCTGCTCTGTTAG

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8162.27 Da
• Isoelectric Point: 7.0084

>AT85250 WP_031658821.1 NZ_CP023632:363210-363437 [Mycobacterium tuberculosis]
MTKEKISVTMDAAVLAAIDADARAAGLNRSEMIEQALRNEHLRVALRDYTAKTVPALDIDAYAQRVYQANRAAGS

Nucleotide

• Length: 228 bp

>AT85250 NZ_CP023632:363210-363437 [Mycobacterium tuberculosis]
ATGACGAAAGAGAAGATCTCCGTGACGATGGACGCGGCCGTCCTCGCGGCGATCGACGCGGACGCCAGGGCGGCGGGTTT
GAATCGGTCGGAAATGATTGAGCAGGCACTGCGCAACGAGCACCTGCGTGTCGCTCTGCGCGATTACACGGCTAAAACCG
TACCGGCGTTGGACATCGATGCCTACGCACAGCGGGTGTACCAGGCGAACCGGGCGGCCGGAAGTTGA