Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 2203633..2204177 | Replicon | chromosome |
| Accession | NZ_CP023619 | ||
| Organism | Mycobacterium tuberculosis strain LN1100 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G0TLU9 |
| Locus tag | CP475_RS10640 | Protein ID | WP_003409896.1 |
| Coordinates | 2203633..2203929 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | P67299 |
| Locus tag | CP475_RS10645 | Protein ID | WP_003409899.1 |
| Coordinates | 2203926..2204177 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP475_RS10585 | 2198666..2199016 | - | 351 | WP_003899096.1 | hypothetical protein | - |
| CP475_RS10590 | 2199027..2199929 | - | 903 | WP_003899097.1 | hypothetical protein | - |
| CP475_RS10595 | 2199950..2200141 | - | 192 | WP_003409876.1 | hypothetical protein | - |
| CP475_RS10600 | 2200142..2200438 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| CP475_RS10605 | 2200678..2200893 | + | 216 | WP_003409878.1 | antitoxin | - |
| CP475_RS10610 | 2200890..2201201 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| CP475_RS21800 | 2201175..2201696 | - | 522 | WP_003904745.1 | hypothetical protein | - |
| CP475_RS10620 | 2201671..2202048 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | - |
| CP475_RS10625 | 2202090..2202539 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | - |
| CP475_RS10630 | 2202536..2203081 | + | 546 | WP_003899098.1 | SecB-like chaperone | - |
| CP475_RS10635 | 2202970..2203584 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| CP475_RS10640 | 2203633..2203929 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| CP475_RS10645 | 2203926..2204177 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| CP475_RS10650 | 2204164..2204658 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| CP475_RS10655 | 2204818..2205225 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
| CP475_RS10660 | 2205229..2205501 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| CP475_RS10665 | 2205534..2206754 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
| CP475_RS10680 | 2207653..2208450 | + | 798 | WP_003899101.1 | ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11268.64 Da Isoelectric Point: 6.8604
>T84493 WP_003409896.1 NZ_CP023619:c2203929-2203633 [Mycobacterium tuberculosis]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
Download Length: 297 bp
>T84493 NZ_CP023619:c2203929-2203633 [Mycobacterium tuberculosis]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9207.17 Da Isoelectric Point: 7.0150
>AT84493 WP_003409899.1 NZ_CP023619:c2204177-2203926 [Mycobacterium tuberculosis]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
Download Length: 252 bp
>AT84493 NZ_CP023619:c2204177-2203926 [Mycobacterium tuberculosis]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TLU9 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4BUZ2 |