Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2869706..2870343 Replicon chromosome
Accession NZ_CP023616
Organism Mycobacterium tuberculosis strain LN3668

Toxin (Protein)


Gene name vapC Uniprot ID P0DMV7
Locus tag CP472_RS13955 Protein ID WP_003413180.1
Coordinates 2869706..2870101 (-) Length 132 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ44
Locus tag CP472_RS13960 Protein ID WP_003413183.1
Coordinates 2870098..2870343 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP472_RS13910 2865109..2866320 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
CP472_RS13920 2866447..2867106 + 660 WP_003900846.1 LppA family lipoprotein -
CP472_RS13925 2867103..2867765 + 663 WP_003900848.1 hypothetical protein -
CP472_RS13930 2867762..2868040 + 279 WP_003901422.1 type II toxin-antitoxin system VapB family antitoxin -
CP472_RS13935 2868133..2868546 + 414 WP_003413164.1 PIN domain nuclease -
CP472_RS13940 2868585..2868842 + 258 WP_003413167.1 ribbon-helix-helix domain-containing protein -
CP472_RS13945 2868839..2869216 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin -
CP472_RS13950 2869232..2869606 - 375 WP_003413177.1 hypothetical protein -
CP472_RS13955 2869706..2870101 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 Toxin
CP472_RS13960 2870098..2870343 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 Antitoxin
CP472_RS13970 2870754..2871173 - 420 WP_003413190.1 A24 family peptidase -
CP472_RS13975 2871185..2871994 - 810 WP_003413193.1 shikimate dehydrogenase -
CP472_RS13980 2871991..2873244 - 1254 WP_003413196.1 endolytic transglycosylase MltG -
CP472_RS13985 2873237..2873749 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Endonuclease VapC20-like

(1-129)

Antitoxin

Ribbon-helix-helix protein, CopG

(11-49)


Sequences

Toxin        


Download         Length: 132 a.a.        Molecular weight: 14619.53 Da        Isoelectric Point: 6.9794

>T84323 WP_003413180.1 NZ_CP023616:c2870101-2869706 [Mycobacterium tuberculosis]
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAAAIRLSTVVRVEHVTADLEE
QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDFSAAGFVEVRPE

Download         Length: 396 bp

>T84323 NZ_CP023616:c2870101-2869706 [Mycobacterium tuberculosis]
ATGATCTTCGTCGACACGTCCTTCTGGGCTGCACTTGGCAACGCCGGCGACGCTCGGCACGGCACCGCGAAGAGGTTGTG
GGCCAGCAAACCGCCCGTGGTGATGACCTCCAACCATGTCCTGGGCGAGACCTGGACGCTGCTCAACCGGCGCTGCGGTC
ACCGCGCGGCGGTTGCCGCCGCTGCAATCCGCTTGAGCACCGTCGTTCGCGTCGAGCACGTAACAGCCGACCTGGAAGAG
CAGGCATGGGAATGGCTTGTACGCCACGACGAGCGAGAGTACTCGTTCGTCGATGCCACGAGCTTCGCGGTGATGCGAAA
GAAAGGCATCCAAAATGCGTATGCCTTCGATGGTGACTTCAGCGCGGCCGGATTTGTCGAGGTAAGACCCGAGTAG

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9098.33 Da        Isoelectric Point: 5.6007

>AT84323 WP_003413183.1 NZ_CP023616:c2870343-2870098 [Mycobacterium tuberculosis]
MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADLSASVDDVVYGKH
E

Download         Length: 246 bp

>AT84323 NZ_CP023616:c2870343-2870098 [Mycobacterium tuberculosis]
ATGCTAGTGGCGTATATTTGCCATGTGAAAAGGCTGCAGATCTACATCGACGAAGACGTTGACCGAGCGCTTGCTGTTGA
AGCGCGACGGCGGCGGACGTCGAAGGCGGCGCTGATCCGGGAGTACGTCGCTGAGCACCTCCGGCAGCCGGGCCCAGATC
CGGTCGATGCCTTCGTCGGATCGTTCGTGGGGGAAGCCGACTTGTCCGCGTCCGTCGACGACGTGGTTTACGGAAAGCAC
GAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5WZ4
PDB 5WZF

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BW31

References