Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/-
Location 2402174..2402703 Replicon chromosome
Accession NZ_CP023616
Organism Mycobacterium tuberculosis strain LN3668

Toxin (Protein)


Gene name parE Uniprot ID G0TMR4
Locus tag CP472_RS11635 Protein ID WP_003411124.1
Coordinates 2402174..2402491 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P9WJ74
Locus tag CP472_RS11640 Protein ID WP_003411127.1
Coordinates 2402488..2402703 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP472_RS11605 2397311..2398387 + 1077 WP_003411110.1 hypothetical protein -
CP472_RS11610 2398384..2398665 + 282 WP_003411112.1 hypothetical protein -
CP472_RS11615 2398701..2399774 + 1074 WP_003411116.1 quinone-dependent dihydroorotate dehydrogenase -
CP472_RS11620 2399779..2400309 - 531 WP_003411119.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
CP472_RS11625 2400357..2401703 - 1347 WP_003411121.1 M20/M25/M40 family metallo-hydrolase -
CP472_RS11635 2402174..2402491 - 318 WP_003411124.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CP472_RS11640 2402488..2402703 - 216 WP_003411127.1 antitoxin ParD2 Antitoxin
CP472_RS11645 2402958..2404016 + 1059 WP_003411129.1 hypothetical protein -
CP472_RS11650 2404146..2404502 - 357 WP_003411130.1 hypothetical protein -
CP472_RS11655 2404597..2405379 - 783 WP_003411131.1 cell wall synthesis protein Wag31 -
CP472_RS11660 2405645..2405935 - 291 WP_003900476.1 YggT family protein -
CP472_RS11665 2406097..2406753 - 657 WP_003411133.1 cell division protein SepF -
CP472_RS11670 2406819..2407595 - 777 WP_003411137.1 YggS family pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Conserved hypothetical protein CHP02574, addiction module

(11-69)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12312.88 Da        Isoelectric Point: 6.4831

>T84318 WP_003411124.1 NZ_CP023616:c2402491-2402174 [Mycobacterium tuberculosis]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE

Download         Length: 318 bp

>T84318 NZ_CP023616:c2402491-2402174 [Mycobacterium tuberculosis]
ATGACGCGCAGGCTGCGCGTCCATAACGGGGTTGAAGACGACCTATTCGAGGCGTTTTCCTACTACGCGGACGCGGCGCC
AGATCAGATCGATCGGCTTTACAACTTGTTTGTCGATGCCGTGACGAAGCGGATTCCGCAGGCTCCGAACGCGTTTGCGC
CGTTATTCAAGCACTATCGACACATCTACCTCCGGCCCTTCAGGTACTACGTTGCCTATCGGACGACCGACGAGGCTATC
GACATACTGGCTGTTCGGCACGGAATGGAGAACCCGAACGCGGTCGAGGCTGAGATCTCTGGCCGCACCTTCGAGTGA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7880.70 Da        Isoelectric Point: 4.4055

>AT84318 WP_003411127.1 NZ_CP023616:c2402703-2402488 [Mycobacterium tuberculosis]
VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDDFDKRIRARLG

Download         Length: 216 bp

>AT84318 NZ_CP023616:c2402703-2402488 [Mycobacterium tuberculosis]
GTGGTGGTCAACCGGGCATTGCTGGCGAGCGTCGACGCACTGTCGCGTGATGAGCAGATTGAGCTCGTCGAGCACATCAA
CGGAAACCTAGCCGAGGGCATGCATATCAGCGAGGCCAACCAGGCGCTCATCGAAGCGCGGGCCAATGACACCGACGATG
CTCATTGGTCCACCATTGATGACTTCGACAAGCGGATCCGCGCCCGGCTCGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TMR4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAJ4

References