Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1384200..1384888 Replicon chromosome
Accession NZ_CP023614
Organism Mycobacterium tuberculosis strain LN3588

Toxin (Protein)


Gene name vapC Uniprot ID G0THR7
Locus tag CP470_RS06795 Protein ID WP_003406304.1
Coordinates 1384457..1384888 (+) Length 144 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0THR6
Locus tag CP470_RS06790 Protein ID WP_003406302.1
Coordinates 1384200..1384460 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP470_RS06770 1379777..1380601 + 825 WP_003900298.1 trehalose ABC transporter permease SugB -
CP470_RS06775 1380606..1381787 + 1182 WP_003406299.1 trehalose ABC transporter ATP-binding protein SugC -
CP470_RS06780 1381864..1382964 - 1101 WP_003406300.1 magnesium/cobalt transporter CorA -
CP470_RS06785 1383135..1384124 + 990 WP_003406301.1 malate dehydrogenase -
CP470_RS06790 1384200..1384460 + 261 WP_003406302.1 type II toxin-antitoxin system antitoxin VapB33 Antitoxin
CP470_RS06795 1384457..1384888 + 432 WP_003406304.1 type II toxin-antitoxin system VapC family toxin Toxin
CP470_RS06800 1384911..1386599 - 1689 WP_003910308.1 PE family protein -
CP470_RS06810 1386779..1387639 + 861 WP_003900301.1 hypothetical protein -
CP470_RS06815 1387720..1388550 - 831 WP_003898788.1 SDR family NAD(P)-dependent oxidoreductase -
CP470_RS06820 1388607..1388900 - 294 WP_003898789.1 type II toxin-antitoxin system mRNA interferase RelE -
CP470_RS06825 1388897..1389166 - 270 WP_003406322.1 type II toxin-antitoxin system Phd/YefM family antitoxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(2-142)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 144 a.a.        Molecular weight: 15873.08 Da        Isoelectric Point: 5.8838

>T84178 WP_003406304.1 NZ_CP023614:1384457-1384888 [Mycobacterium tuberculosis]
VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTADAIAYVREWLSQPNVD
LLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTDFARFADLKWTDPLRE

Download         Length: 432 bp

>T84178 NZ_CP023614:1384457-1384888 [Mycobacterium tuberculosis]
GTGATCATCCCTGACATCAATCTGCTGCTCTACGCGGTCATCACCGGATTCCCGCAGCACCGGCGCGCGCATGCGTGGTG
GCAAGACACCGTCAACGGCCACACCCGTATCGGGCTGACGTATCCGGCGTTGTTCGGGTTCCTACGGATCGCCACCAGTG
CCCGCGTGCTCGCCGCGCCACTGCCAACCGCGGATGCGATCGCCTATGTGCGCGAGTGGCTTTCGCAGCCGAACGTGGAC
CTACTCACGGCGGGTCCGCGCCACCTGGACATCGCGTTGGGCCTGCTCGACAAGCTCGGCACAGCCAGCCACCTAACCAC
CGATGTGCAACTGGCCGCCTACGGCATCGAATACGACGCCGAGATCCATTCCAGTGACACCGACTTTGCCCGATTCGCCG
ATCTGAAGTGGACCGACCCGTTGCGCGAATAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9918.25 Da        Isoelectric Point: 6.4755

>AT84178 WP_003406302.1 NZ_CP023614:1384200-1384460 [Mycobacterium tuberculosis]
MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLD
ATRRAR

Download         Length: 261 bp

>AT84178 NZ_CP023614:1384200-1384460 [Mycobacterium tuberculosis]
ATGCGCACCACCTTGACGCTCGATGACGACGTCGTCCGGCTGGTCGAAGACGCAGTGCATCGCGAACGCCGCCCGATGAA
GCAGGTCATCAACGATGCGCTGCGCAGAGCGCTGGCGCCGCCGGTGAAACGGCAGGAGCAGTATCGGTTGGAGCCGCATG
AGTCGGCTGTGCGTTCCGGGTTGGATCTGGCCGGCTTCAACAAGTTGGCCGACGAACTGGAGGATGAGGCGCTGCTGGAT
GCCACGCGTCGGGCCCGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0THR7

Antitoxin

Source ID Structure
AlphaFold DB G0THR6

References