Detailed information of TA system TA084177

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1239335..1239903
• Replicon: chromosome
• Accession: NZ_CP023614
• Organism: Mycobacterium tuberculosis strain LN3588

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: CP470_RS06100
• Protein ID: WP_003405865.1
• Coordinates: 1239529..1239903 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: CP470_RS06095
• Protein ID: WP_003405863.1
• Coordinates: 1239335..1239532 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CP470_RS06075	1235376..1236014	-	639	WP_003898730.1	lipid droplet-associated protein	-
CP470_RS06080	1236104..1237111	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
CP470_RS06085	1237128..1238111	-	984	WP_003898731.1	hypothetical protein	-
CP470_RS06090	1238174..1239247	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
CP470_RS06095	1239335..1239532	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
CP470_RS06100	1239529..1239903	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
CP470_RS06105	1240106..1240804	+	699	WP_003898733.1	hypothetical protein	-
CP470_RS06110	1240922..1241107	+	186	WP_003901093.1	hypothetical protein	-
CP470_RS06115	1241034..1241309	-	276	WP_003405867.1	hypothetical protein	-
CP470_RS06120	1241552..1241875	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
CP470_RS06125	1241890..1242600	-	711	WP_003911399.1	hypothetical protein	-
CP470_RS21755	1242622..1242831	+	210	WP_003911400.1	hypothetical protein	-
CP470_RS06130	1242783..1243490	-	708	Protein_1163	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T84177 WP_003405865.1 NZ_CP023614:1239529-1239903 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T84177 NZ_CP023614:1239529-1239903 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT84177 WP_003405863.1 NZ_CP023614:1239335-1239532 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT84177 NZ_CP023614:1239335-1239532 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07