Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapC-mazE/PIN(toxin)
Location 754892..755684 Replicon chromosome
Accession NZ_CP023614
Organism Mycobacterium tuberculosis strain LN3588

Toxin (Protein)


Gene name vapC Uniprot ID P9WFB2
Locus tag CP470_RS03560 Protein ID WP_003403386.1
Coordinates 755247..755684 (-) Length 146 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TQE0
Locus tag CP470_RS03555 Protein ID WP_003403381.1
Coordinates 754892..755137 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP470_RS03525 749912..751417 + 1506 WP_003403360.1 carotenoid cleavage oxygenase -
CP470_RS03530 751498..752508 + 1011 WP_009937374.1 ABC transporter ATP-binding protein -
CP470_RS03535 752896..753279 - 384 WP_003403365.1 ribonuclease VapC6 -
CP470_RS03540 753374..753529 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
CP470_RS03545 753605..754321 - 717 WP_003403371.1 CPBP family intramembrane metalloprotease -
CP470_RS03550 754597..754905 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin -
CP470_RS03555 754892..755137 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family Antitoxin
CP470_RS03560 755247..755684 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin Toxin
CP470_RS03565 755681..755935 - 255 WP_003911263.1 antitoxin VapB7 -
CP470_RS03570 756049..758412 + 2364 WP_003898547.1 arylsulfatase AtsD -
CP470_RS03575 758475..758801 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
CP470_RS03580 758713..759051 + 339 WP_003403405.1 PIN domain-containing protein -
CP470_RS03585 759048..759221 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-126)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 146 a.a.        Molecular weight: 15245.39 Da        Isoelectric Point: 5.1865

>T84170 WP_003403386.1 NZ_CP023614:c755684-755247 [Mycobacterium tuberculosis]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Download         Length: 438 bp

>T84170 NZ_CP023614:c755684-755247 [Mycobacterium tuberculosis]
ATGATAGTGCTCGACACCACCGTCCTCGTCTATGCCAAAGGCGCCGAGCATCCACTCCGCGATCCCTGCCGCGATCTCGT
CGCGGCAATCGCCGACGAACGCATCGCTGCGACCACCACCGCCGAGGTGATCCAGGAGTTCGTCCACGTACGCGCCCGCC
GGCGCGACCGCAGCGACGCCGCCGCGCTGGGCCGTGTGACTATGCCGAACTGCTCTCGCCGCTACTCACCATCAATCGAG
GCCACCTCGAAGCGCGGCCTGACGCTGTTCGAGACAACGCCAGGGCTTGAAGCCTGCGACGCGGTGCTCGCGGCGGTTGC
CGCAAGCGCCGGCGCGACCGCTCTTGTCTCGGCTGACCCGGCGTTCGCCGATCTGTCGGATGTCGTGCACGTCATTCCCG
ACGCGGCCGGGATGGTCAGCCTGCTCGGCGACCGCTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9169.01 Da        Isoelectric Point: 4.2070

>AT84170 WP_003403381.1 NZ_CP023614:c755137-754892 [Mycobacterium tuberculosis]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Download         Length: 246 bp

>AT84170 NZ_CP023614:c755137-754892 [Mycobacterium tuberculosis]
ATGCTCAGCTTCCGCGCCGACGACCACGACGTCGACCTGGCCGACGCGTGGGCGCGTCGCCTACACATCGGCCGCTCCGA
GCTGCTGCGCGATGCGCTGCGACGTCACTTGGCCGCGCTGGCCGCGGACCAGGATGTCCAGGCCTACACCGAGCGACCGT
TGACGGACGACGAGAACGCACTGGCTGAGATCGCCGACTGGGGGCCGGCGGAGGACTGGGCCGACTGGGCCGATGCGGCG
CGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSW5

Antitoxin

Source ID Structure
AlphaFold DB G0TQE0

References