Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 694751..695397 Replicon chromosome
Accession NZ_CP023614
Organism Mycobacterium tuberculosis strain LN3588

Toxin (Protein)


Gene name vapC Uniprot ID O07783
Locus tag CP470_RS03180 Protein ID WP_003403122.1
Coordinates 694751..695143 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TQ86
Locus tag CP470_RS03185 Protein ID WP_003403125.1
Coordinates 695140..695397 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP470_RS03165 690413..691939 + 1527 WP_003403112.1 virulence factor Mce family protein -
CP470_RS03170 692002..693144 + 1143 WP_003911253.1 virulence factor Mce family protein -
CP470_RS03175 693149..694699 + 1551 WP_003403119.1 MCE family protein -
CP470_RS03180 694751..695143 - 393 WP_003403122.1 type II toxin-antitoxin system toxin ribonuclease C4 Toxin
CP470_RS03185 695140..695397 - 258 WP_003403125.1 type II toxin-antitoxin system antitoxin VapB4 Antitoxin
CP470_RS03190 695580..696815 - 1236 WP_003403128.1 ATP-binding protein -
CP470_RS03195 697066..697479 - 414 WP_003403137.1 type II toxin-antitoxin system VapC family toxin -
CP470_RS03200 697476..697712 - 237 WP_003403139.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
CP470_RS03205 697816..698322 - 507 WP_003900973.1 two component system sensor kinase HK1 -
CP470_RS03210 698436..698966 - 531 WP_003917320.1 two component system sensor kinase HK2 -
CP470_RS03215 698950..699645 - 696 WP_003918099.1 two-component system response regulator TcrA -
CP470_RS03220 699768..700079 + 312 WP_003403164.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-122)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-53)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14080.08 Da        Isoelectric Point: 4.6558

>T84162 WP_003403122.1 NZ_CP023614:c695143-694751 [Mycobacterium tuberculosis]
VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAW
ALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI

Download         Length: 393 bp

>T84162 NZ_CP023614:c695143-694751 [Mycobacterium tuberculosis]
GTGAACGTACGGCGCGCCCTCGCCGACACATCCGTTTTCATTGGCATCGAGGCGACACGATTCGACCCGGACCGGTTTGC
GGGATACGAATGGGGCGTCTCGGTAGTCACACTCGGCGAGCTGCGGCTCGGGGTGTTGCAAGCCTCCGGCCCCGAGGCCG
CCGCACGTCGGCTCTCCACCTACCAGCTTGCGCAACGGTTCGAACCACTAGGCATCGACGAGGCGGTCTCCGAAGCATGG
GCATTACTGGTGTCCAAGCTGCGCGCCGCCAAACTGCGCGTGCCGATCAACGACAGCTGGATTGCGGCCACAGCCGTGGC
GCACGGCATTGCGATCCTGACCCAAGACAACGACTACGCCGCCATGCCCGACGTCGAGGTCATAACGATCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9681.06 Da        Isoelectric Point: 7.0175

>AT84162 WP_003403125.1 NZ_CP023614:c695397-695140 [Mycobacterium tuberculosis]
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGEELRETLTQTT
DDVRW

Download         Length: 258 bp

>AT84162 NZ_CP023614:c695397-695140 [Mycobacterium tuberculosis]
ATGTCTGCTACGATACCCGCTCGCGATCTTCGCAACCACACCGCCGAGGTACTGCGGCGAGTTGCCGCCGGCGAGGAAAT
CGAGGTGCTCAAGGACAATCGCCCCGTAGCGCGCATCGTTCCGCTCAAGCGGCGCCGCCAATGGTTGCCAGCTGCCGAGG
TGATCGGCGAACTGGTGCGCTTGGGCCCCGATACCACCAATCTGGGCGAGGAGCTGCGAGAGACGCTGACGCAAACCACG
GACGATGTGCGGTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4F8V4

Antitoxin

Source ID Structure
AlphaFold DB G0TQ86

References