Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 2225300..2225988 Replicon chromosome
Accession NZ_CP023612
Organism Mycobacterium tuberculosis strain LN2978

Toxin (Protein)


Gene name vapC Uniprot ID P0A653
Locus tag CP468_RS10765 Protein ID WP_003409958.1
Coordinates 2225300..2225719 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ28
Locus tag CP468_RS10770 Protein ID WP_003409968.1
Coordinates 2225728..2225988 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP468_RS10745 2220795..2221643 + 849 WP_003409942.1 class I SAM-dependent methyltransferase -
CP468_RS10750 2221606..2223051 - 1446 WP_003899115.1 APC family permease -
CP468_RS10755 2223230..2223916 - 687 WP_031658905.1 immunoprotective protein Mpt64 -
CP468_RS10760 2224107..2225075 - 969 WP_003899116.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
CP468_RS10765 2225300..2225719 - 420 WP_003409958.1 type II toxin-antitoxin system VapC family toxin Toxin
CP468_RS10770 2225728..2225988 - 261 WP_003409968.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
CP468_RS10775 2226131..2227807 + 1677 WP_003899118.1 PecA family PE domain-processing aspartic protease -
CP468_RS10780 2227795..2228448 - 654 WP_003409976.1 cutinase Cfp21 -
CP468_RS10785 2228563..2228793 + 231 WP_003409980.1 DUF167 domain-containing protein -
CP468_RS10790 2228878..2229789 - 912 WP_003409986.1 ArgP/LysG family DNA-binding transcriptional regulator -
CP468_RS10795 2229898..2230497 + 600 WP_003409989.1 L-lysine exporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-125)

Antitoxin

Antitoxin VapB-like

(2-81)


Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 14724.89 Da        Isoelectric Point: 7.9535

>T84067 WP_003409958.1 NZ_CP023612:c2225719-2225300 [Mycobacterium tuberculosis]
MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLRSEIGLSVSSFTAEHAAAT
QRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFPQTDLEFRGVVGYWPGVA

Download         Length: 420 bp

>T84067 NZ_CP023612:c2225719-2225300 [Mycobacterium tuberculosis]
ATGATCGTGGACACAAGCGCCGTGGTGGCCCTGGTTCAAGGCGAGCGGCCGCACGCCACCCTGGTCGCGGCCGCCCTGGC
CGGCGCCCATAGCCCCGTCATGTCTGCACCCACCGTCGCCGAATGCCTGATTGTCTTGACCGCCCGTCACGGCCCCGTTG
CGCGCACGATCTTCGAACGACTTCGCAGCGAAATCGGCTTGAGCGTGTCATCTTTCACCGCCGAGCATGCCGCTGCCACG
CAACGAGCCTTTCTGCGATACGGCAAGGGGCGCCACCGCGCGGCTCTCAACTTCGGAGACTGTATGACGTACGCGACCGC
CCAGCTGGGCCACCAACCACTGCTGGCCGTCGGCAACGACTTCCCGCAAACCGACCTTGAGTTCCGCGGCGTCGTCGGCT
ACTGGCCAGGCGTCGCGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9528.88 Da        Isoelectric Point: 5.1007

>AT84067 WP_003409968.1 NZ_CP023612:c2225988-2225728 [Mycobacterium tuberculosis]
VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIWPLLADRSPITKLEREQILGY
DPATGV

Download         Length: 261 bp

>AT84067 NZ_CP023612:c2225988-2225728 [Mycobacterium tuberculosis]
GTGGCGCTGAATATCAAAGACCCTGAGGTAGACCGACTAGCCGCCGAACTCGCTGACCGGCTGCACACCAGCAAGACTGC
CGCCATCCGGCATGCCCTGTCTGCCCAGCTGGCGTTTTTGGAGTCGCGCGCCGGCGACCGTGAGGCACAACTTCTCGACA
TCTTGCGTACCGAAATCTGGCCCCTGCTTGCCGACCGCTCCCCCATCACCAAGCTCGAGCGCGAACAAATCCTCGGCTAC
GACCCCGCAACCGGAGTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829C4H9

Antitoxin

Source ID Structure
AlphaFold DB A0A829C483

References