Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 2257893..2258519 Replicon chromosome
Accession NZ_CP023606
Organism Mycobacterium tuberculosis strain LE103

Toxin (Protein)


Gene name vapC Uniprot ID P64926
Locus tag CP462_RS10945 Protein ID WP_003410075.1
Coordinates 2258121..2258519 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A806JLL8
Locus tag CP462_RS10940 Protein ID WP_003911750.1
Coordinates 2257893..2258120 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP462_RS10930 2255932..2256276 - 345 WP_003410065.1 ferredoxin family protein -
CP462_RS10935 2256465..2257634 - 1170 WP_003899126.1 ATP-binding protein -
CP462_RS10940 2257893..2258120 + 228 WP_003911750.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
CP462_RS10945 2258121..2258519 + 399 WP_003410075.1 PIN domain nuclease Toxin
CP462_RS10950 2258702..2259133 - 432 WP_003410078.1 MarR family winged helix-turn-helix transcriptional regulator -
CP462_RS10955 2259234..2259668 + 435 WP_003914358.1 DUF1398 domain-containing protein -
CP462_RS10970 2260105..2260284 - 180 Protein_2080 hypothetical protein -
CP462_RS10975 2260345..2260992 + 648 WP_071854215.1 transposase -
CP462_RS10980 2260946..2261536 + 591 WP_003899131.1 IS110 family transposase -
CP462_RS10985 2261664..2262920 - 1257 WP_003410095.1 HNH endonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-120)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(2-43)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14731.02 Da        Isoelectric Point: 6.7067

>T83705 WP_003410075.1 NZ_CP023606:2258121-2258519 [Mycobacterium tuberculosis]
MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLLQRFAIEPLAPVRDAEDAAAI
HRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAIRTHCGLRTEPLF

Download         Length: 399 bp

>T83705 NZ_CP023606:2258121-2258519 [Mycobacterium tuberculosis]
ATGATCGTCGACACCTCGGTCTGGATCGCATATCTCTCCACGTCAGAGTCGTTGGCCAGTCGCTGGCTAGCCGATCGCAT
TGCCGCTGACTCGACGGTGATCGTGCCCGAGGTGGTGATGATGGAGCTGCTGATCGGTAAGACCGATGAGGACACCGCCG
CACTGCGCCGACGGCTCCTGCAGCGATTCGCTATCGAACCGCTGGCCCCGGTCCGCGACGCGGAAGATGCCGCCGCCATT
CACCGGCGCTGTCGTCGCGGCGGCGACACCGTACGCAGCCTGATCGATTGCCAGGTGGCCGCGATGGCGTTGCGGATCGG
GGTCGCCGTGGCGCATCGTGATCGCGACTACGAGGCGATCCGCACACATTGCGGACTACGCACCGAGCCGTTGTTCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8346.16 Da        Isoelectric Point: 4.1621

>AT83705 WP_003911750.1 NZ_CP023606:2257893-2258120 [Mycobacterium tuberculosis]
VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIESFSDTDRKLADES

Download         Length: 228 bp

>AT83705 NZ_CP023606:2257893-2258120 [Mycobacterium tuberculosis]
GTGTCACGGACCAACATCGAGATCGACGACGAACTCGTGGCCGCCGCACAGCGGATGTACCGACTCGATTCCAAGCGAAG
TGCCGTCGACCTCGCGCTGCGCCGGCTCGTGGGTGAACCGTTGGGCCGCGATGAGGCTTTGGCGCTGCAGGGCAGCGGTT
TCGACTTCAGCAACGATGAGATCGAATCGTTCTCGGATACGGACCGCAAGCTCGCCGACGAGTCGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4CHG

Antitoxin

Source ID Structure
AlphaFold DB A0A806JLL8

References