Detailed information of TA system TA083589

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2854010..2854650
• Replicon: chromosome
• Accession: NZ_CP023604
• Organism: Mycobacterium tuberculosis strain LE76

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: CP460_RS13865
• Protein ID: WP_003412970.1
• Coordinates: 2854010..2854429 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: CP460_RS13870
• Protein ID: WP_003412975.1
• Coordinates: 2854426..2854650 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CP460_RS13835	2849595..2850317	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
CP460_RS13845	2850834..2851061	+	228	WP_003412960.1	type II toxin-antitoxin system VapB family antitoxin	-
CP460_RS13850	2851058..2851459	+	402	WP_003412963.1	PIN domain-containing protein	-
CP460_RS13855	2851494..2852414	-	921	WP_003412965.1	restriction endonuclease	-
CP460_RS21865	2852755..2853000	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
CP460_RS13860	2853059..2854009	+	951	WP_003911916.1	Lsr2 family protein	-
CP460_RS13865	2854010..2854429	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
CP460_RS13870	2854426..2854650	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
CP460_RS13875	2854681..2857524	-	2844	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
CP460_RS13880	2857596..2857997	-	402	WP_003412981.1	hypothetical protein	-
CP460_RS13885	2857997..2858467	-	471	WP_003899364.1	transcription antitermination factor NusB	-
CP460_RS13890	2858470..2859033	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T83589 WP_003412970.1 NZ_CP023604:c2854429-2854010 [Mycobacterium tuberculosis]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T83589 NZ_CP023604:c2854429-2854010 [Mycobacterium tuberculosis]
GTGACGGCACTGCTCGATGTCAATGTGCTGATCGCGCTGGGCTGGCCGAATCACGTTCACCATGCGGCCGCGCAGCGATG
GTTCACGCAGTTCTCCTCGAATGGGTGGGCCACCACGCCGATCACCGAGGCAGGGTATGTCCGAATTTCAAGCAATCGCA
GTGTGATGCAGGTGTCGACCACGCCGGCTATCGCGATCGCTCAGTTGGCGGCGATGACTTCTCTTGCCGGGCACACGTTT
TGGCCTGACGATGTGCCACTGATCGTTGGGAGCGCCGGCGATCGCGATGCGGTGTCCAACCACCGTCGGGTCACCGACTG
CCATCTCATCGCCTTGGCCGCGCGCTACGGGGGCCGGTTGGTCACATTCGATGCCGCACTGGCCGATTCAGCATCCGCAG
GCCTCGTCGAGGTGTTGTAG

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT83589 WP_003412975.1 NZ_CP023604:c2854650-2854426 [Mycobacterium tuberculosis]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT83589 NZ_CP023604:c2854650-2854426 [Mycobacterium tuberculosis]
ATGCGCACCACGTTGCAGATTGATGATGATGTTCTAGAAGATGCTCGTAGCATCGCGCGGTCGGAGGGCAAGTCAGTCGG
CGCGGTAATTTCTGAGTTGGCGCGTAGGTCGCTCCGTCCGGTTGGGATTGTCGAGGTTGACGGATTTCCGGTTTTTGATG
TTCCGCCGGATGCGCCGACGGTGACTTCCGAGGATGTCGTCCGCGCGCTCGAGGACGACGTGTGA

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09