Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1946893..1947506 Replicon chromosome
Accession NZ_CP023604
Organism Mycobacterium tuberculosis strain LE76

Toxin (Protein)


Gene name vapC Uniprot ID P9WFA2
Locus tag CP460_RS09385 Protein ID WP_003408465.1
Coordinates 1946893..1947282 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ52
Locus tag CP460_RS09390 Protein ID WP_003408469.1
Coordinates 1947279..1947506 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP460_RS09355 1942523..1943437 + 915 WP_003898985.1 3-hydroxyacyl-CoA dehydrogenase family protein -
CP460_RS09360 1943440..1944270 + 831 WP_003906661.1 cyclase family protein -
CP460_RS09365 1944270..1944619 + 350 Protein_1773 cupin domain-containing protein -
CP460_RS09370 1944672..1945490 + 819 WP_003408456.1 3-keto-5-aminohexanoate cleavage protein -
CP460_RS09375 1945504..1946283 + 780 WP_003408460.1 IclR family transcriptional regulator -
CP460_RS09385 1946893..1947282 - 390 WP_003408465.1 PIN domain-containing protein Toxin
CP460_RS09390 1947279..1947506 - 228 WP_003408469.1 antitoxin Antitoxin
CP460_RS09395 1947724..1949208 + 1485 WP_009937637.1 biotin carboxylase -
CP460_RS09400 1949205..1950452 + 1248 WP_003408476.1 serine hydrolase -
CP460_RS09405 1950495..1950914 - 420 WP_070890775.1 hypothetical protein -
CP460_RS09410 1950904..1951614 - 711 WP_003408486.1 winged helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-116)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 13817.98 Da        Isoelectric Point: 7.0612

>T83575 WP_003408465.1 NZ_CP023604:c1947282-1946893 [Mycobacterium tuberculosis]
VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFT
QRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA

Download         Length: 390 bp

>T83575 NZ_CP023604:c1947282-1946893 [Mycobacterium tuberculosis]
GTGATCGTGTTGGACGCCTCGGCGGCCGTCGAGCTCATGCTCACGACGCCGGCGGGTGCGGCGGTCGCCCGGCGCTTGCG
GGGCGAAACCGTGCACGCCCCTGCACATTTCGATGTCGAGGTGATCGGGGCGATACGTCAAGCGGTCGTGCGTCAGCTGA
TCAGCGATCATGAAGGACTCGTCGTGGTTGTCAACTTCCTTAGCCTGCCCGTTCGGCGTTGGCCGTTAAAGCCATTCACC
CAGCGTGCCTACCAACTTCGGTCCACTCATACCGTGGCCGATGGAGCCTACGTCGCCCTCGCCGAGGGCCTCGGCGTACC
GCTTATCACTTGCGACGGGCGACTTGCCCAATCCCATGGCCATAATGCGGAGATCGAGCTTGTCGCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8226.39 Da        Isoelectric Point: 4.3313

>AT83575 WP_003408469.1 NZ_CP023604:c1947506-1947279 [Mycobacterium tuberculosis]
MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEPALDDVLDRLAALPRRDLGASAAELVDEARSE

Download         Length: 228 bp

>AT83575 NZ_CP023604:c1947506-1947279 [Mycobacterium tuberculosis]
ATGTCCGCCATGGTTCAGATCCGCAACGTTCCCGACGAGCTTCTCCACGAGCTGAAGGCCCGCGCAGCGGCGCAACGGAT
GAGCCTGAGCGATTTCCTCCTAGCACGGCTTGCCGAGATCGCGGAAGAACCGGCCCTCGACGACGTTCTCGACCGTCTAG
CGGCACTGCCGCGCCGGGATCTCGGCGCGAGCGCAGCCGAGCTTGTTGACGAGGCTCGATCTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BUI9

Antitoxin

Source ID Structure
PDB 7E4J
AlphaFold DB A0A7U4FAN9

References