Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 1967666..1968126 Replicon chromosome
Accession NZ_CP023598
Organism Mycobacterium tuberculosis strain SLM100

Toxin (Protein)


Gene name vapC Uniprot ID G0TKL9
Locus tag CP454_RS09490 Protein ID WP_003898996.1
Coordinates 1967878..1968126 (+) Length 83 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ30
Locus tag CP454_RS09485 Protein ID WP_003408528.1
Coordinates 1967666..1967878 (+) Length 71 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP454_RS09470 1964144..1965331 - 1188 WP_003898992.1 nitrate transporter NarK -
CP454_RS09475 1965618..1965902 + 285 WP_003408522.1 DUF1876 domain-containing protein -
CP454_RS09480 1965916..1967598 - 1683 WP_003898994.1 SulP family inorganic anion transporter -
CP454_RS09485 1967666..1967878 + 213 WP_003408528.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
CP454_RS09490 1967878..1968126 + 249 WP_003898996.1 type II toxin-antitoxin system VapC family toxin Toxin
CP454_RS09495 1968134..1968871 + 738 WP_003898997.1 hypothetical protein -
CP454_RS09500 1968965..1970665 + 1701 WP_003898998.1 serine/threonine protein kinase PknE -
CP454_RS09505 1970950..1971351 - 402 WP_003408538.1 hypothetical protein -
CP454_RS09510 1971341..1971952 - 612 WP_003898999.1 isopentenyl-diphosphate Delta-isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Antitoxin VapB-like

(2-69)


Sequences

Toxin        


Download         Length: 83 a.a.        Molecular weight: 8884.14 Da        Isoelectric Point: 4.1074

>T83211 WP_003898996.1 NZ_CP023598:1967878-1968126 [Mycobacterium tuberculosis]
MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVSGQPLLYKGDDFACIDIRAVL
AG

Download         Length: 249 bp

>T83211 NZ_CP023598:1967878-1968126 [Mycobacterium tuberculosis]
ATGGTGATCGATACCTCTGCGCTGGTCGCGATGCTCAACGATGAACCCGAGGCGCAACGGTTCGAGATAGCCGTGGCAGC
AGACCACGTTTGGCTGATGTCGACGGCGTCATATCCGGAGATGGCGACCGTGATCGAAACACGCTTCGGGGAACCGGGGG
GACGTGAACCCAAGGTCAGCGGCCAGCCTCTCCTCTATAAGGGTGACGATTTCGCATGTATCGATATTCGCGCGGTTCTC
GCCGGCTGA

Antitoxin


Download         Length: 71 a.a.        Molecular weight: 7607.80 Da        Isoelectric Point: 9.3146

>AT83211 WP_003408528.1 NZ_CP023598:1967666-1967878 [Mycobacterium tuberculosis]
MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDERGLPA

Download         Length: 213 bp

>AT83211 NZ_CP023598:1967666-1967878 [Mycobacterium tuberculosis]
ATGGAATTGGCGGCTCGAATGGGCGAGACTTTGACACAAGCGGTCGTAGTTGCAGTGCGGGAGCAACTGGCCCGCCGGAC
CGGGCGCACCAGATCCATTTCGCTACGCGAGGAGTTGGCCGCCATTGGCCGGCGCTGCGCGGCCTTACCGGTGCTCGACA
CCCGAGCCGCGGACACGATTCTCGGCTACGACGAGCGCGGGTTGCCCGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TKL9

Antitoxin

Source ID Structure
AlphaFold DB A0A829CFE8

References