Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1946777..1947390 Replicon chromosome
Accession NZ_CP023595
Organism Mycobacterium tuberculosis strain SLM060

Toxin (Protein)


Gene name vapC Uniprot ID P9WFA2
Locus tag CP451_RS09380 Protein ID WP_003408465.1
Coordinates 1946777..1947166 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ52
Locus tag CP451_RS09385 Protein ID WP_003408469.1
Coordinates 1947163..1947390 (-) Length 76 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP451_RS09350 1942406..1943320 + 915 WP_003898985.1 3-hydroxyacyl-CoA dehydrogenase family protein -
CP451_RS09355 1943323..1944153 + 831 WP_003408448.1 cyclase family protein -
CP451_RS09360 1944153..1944503 + 351 WP_003898986.1 cupin domain-containing protein -
CP451_RS09365 1944556..1945374 + 819 WP_003408456.1 3-keto-5-aminohexanoate cleavage protein -
CP451_RS09370 1945388..1946167 + 780 WP_003408460.1 IclR family transcriptional regulator -
CP451_RS09380 1946777..1947166 - 390 WP_003408465.1 PIN domain-containing protein Toxin
CP451_RS09385 1947163..1947390 - 228 WP_003408469.1 antitoxin Antitoxin
CP451_RS09390 1947608..1949092 + 1485 WP_003408473.1 carboxylase -
CP451_RS09395 1949089..1950336 + 1248 WP_003408476.1 serine hydrolase -
CP451_RS09400 1950379..1950798 - 420 WP_003408483.1 hypothetical protein -
CP451_RS09405 1950788..1951498 - 711 WP_003408486.1 winged helix-turn-helix transcriptional regulator -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-116)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 130 a.a.        Molecular weight: 13817.98 Da        Isoelectric Point: 7.0612

>T83027 WP_003408465.1 NZ_CP023595:c1947166-1946777 [Mycobacterium tuberculosis]
VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFT
QRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA

Download         Length: 390 bp

>T83027 NZ_CP023595:c1947166-1946777 [Mycobacterium tuberculosis]
GTGATCGTGTTGGACGCCTCGGCGGCCGTCGAGCTCATGCTCACGACGCCGGCGGGTGCGGCGGTCGCCCGGCGCTTGCG
GGGCGAAACCGTGCACGCCCCTGCACATTTCGATGTCGAGGTGATCGGGGCGATACGTCAAGCGGTCGTGCGTCAGCTGA
TCAGCGATCATGAAGGACTCGTCGTGGTTGTCAACTTCCTTAGCCTGCCCGTTCGGCGTTGGCCGTTAAAGCCATTCACC
CAGCGTGCCTACCAACTTCGGTCCACTCATACCGTGGCCGATGGAGCCTACGTCGCCCTCGCCGAGGGCCTCGGCGTACC
GCTTATCACTTGCGACGGGCGACTTGCCCAATCCCATGGCCATAATGCGGAGATCGAGCTTGTCGCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8226.39 Da        Isoelectric Point: 4.3313

>AT83027 WP_003408469.1 NZ_CP023595:c1947390-1947163 [Mycobacterium tuberculosis]
MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEPALDDVLDRLAALPRRDLGASAAELVDEARSE

Download         Length: 228 bp

>AT83027 NZ_CP023595:c1947390-1947163 [Mycobacterium tuberculosis]
ATGTCCGCCATGGTTCAGATCCGCAACGTTCCCGACGAGCTTCTCCACGAGCTGAAGGCCCGCGCAGCGGCGCAACGGAT
GAGCCTGAGCGATTTCCTCCTAGCACGGCTTGCCGAGATCGCGGAAGAACCGGCCCTCGACGACGTTCTCGACCGTCTAG
CGGCACTGCCGCGCCGGGATCTCGGCGCGAGCGCAGCCGAGCTTGTTGACGAGGCTCGATCTGAGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A7U4BUI9


Antitoxin

Source ID Structure
PDB 7E4J
AlphaFold DB A0A7U4FAN9

References