Detailed information of TA system TA082339

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/AbrB(antitoxin)
• Location: 696999..697645
• Replicon: chromosome
• Accession: NZ_CP023584
• Organism: Mycobacterium tuberculosis strain MDRDM627

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ88
• Locus tag: CP440_RS03195
• Protein ID: WP_003403137.1
• Coordinates: 696999..697412 (-)
• Length: 138 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ89
• Locus tag: CP440_RS03200
• Protein ID: WP_003403139.1
• Coordinates: 697409..697645 (-)
• Length: 79 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CP440_RS03175	693082..694632	+	1551	WP_003403119.1	MCE family protein	-
CP440_RS03180	694684..695076	-	393	WP_003403122.1	type II toxin-antitoxin system toxin ribonuclease C4	-
CP440_RS03185	695073..695330	-	258	WP_003403125.1	type II toxin-antitoxin system antitoxin VapB4	-
CP440_RS03190	695513..696748	-	1236	WP_003403128.1	ATP-binding protein	-
CP440_RS03195	696999..697412	-	414	WP_003403137.1	type II toxin-antitoxin system VapC family toxin	Toxin
CP440_RS03200	697409..697645	-	237	WP_003403139.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
CP440_RS03205	697749..698255	-	507	WP_003900973.1	two component system sensor kinase HK1	-
CP440_RS03210	698369..698899	-	531	WP_003917320.1	two component system sensor kinase HK2	-
CP440_RS03215	698883..699578	-	696	WP_003918099.1	two-component system response regulator TcrA	-
CP440_RS03220	699701..700012	+	312	WP_003403164.1	hypothetical protein	-
CP440_RS03225	700084..701034	+	951	WP_003900184.1	DUF1259 domain-containing protein	-
CP440_RS03230	701275..701859	+	585	WP_003403171.1	IS607-like element IS1536 family transposase	-
CP440_RS03235	701861..702571	+	711	Protein_626	transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (7-126)

Antitoxin

• SpoVT-AbrB domain (3-43)

Sequences

Toxin

Protein

• Length: 138 a.a.
• Molecular weight: 14786.14 Da
• Isoelectric Point: 8.1405

>T82339 WP_003403137.1 NZ_CP023584:c697412-696999 [Mycobacterium tuberculosis]
VKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSR
TTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHVVVAA

Nucleotide

• Length: 414 bp

>T82339 NZ_CP023584:c697412-696999 [Mycobacterium tuberculosis]
GTGAAACCGCCGCTGGCAGTGGACACCAGCGTCGCGATTCCGTTGCTGGTACGGACCCATACCGCGCATGCGGCGGTTGT
CGCCTGGTGGGCACATCGGGAGGCCGCGCTGTGCGGGCACGCCCTGGCCGAAACCTACTCCGTGCTGACCCGCCTGCCGC
GTGACCTACGACTGGCACCGATGGACGCCGCGCGGCTTCTTACCGAACGCTTTGCGGCACCGCTGTTGTTGAGTTCCCGC
ACCACTGAACATCTCCCACGCGTGCTGGCCCAATTCGAGATCACTGGTGGCGCGGTCTATGACGCTCTCGTGGCCCTTGC
CGCCGCCGAGCACCGGGCTGAACTCGCCACACGCGATGCTCGAGCCAAGGACACTTACGAAAAGATCGGCGTCCACGTCG
TTGTCGCCGCGTGA

Antitoxin

Protein

• Length: 79 a.a.
• Molecular weight: 8212.41 Da
• Isoelectric Point: 5.0351

>AT82339 WP_003403139.1 NZ_CP023584:c697645-697409 [Mycobacterium tuberculosis]
MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK

Nucleotide

• Length: 237 bp

>AT82339 NZ_CP023584:c697645-697409 [Mycobacterium tuberculosis]
ATGAAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTC
CACCGTGGAAATATCCCGCTATGGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAGAGGAGAATG
GCGTACTGGTGGCCACCGGTGAGACCACGATCGACGATGAGGTCGTGTTCGGCCTTATCGATAGCGGCCGGAAGTGA

Structures

Toxin

• AlphaFold DB: G0TQ88

Antitoxin

• AlphaFold DB: G0TQ89