Detailed information of TA system TA082292

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1239269..1239837
• Replicon: chromosome
• Accession: NZ_CP023583
• Organism: Mycobacterium tuberculosis strain MDRDM260

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: CP439_RS06100
• Protein ID: WP_003405865.1
• Coordinates: 1239463..1239837 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: CP439_RS06095
• Protein ID: WP_003405863.1
• Coordinates: 1239269..1239466 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CP439_RS06075	1235310..1235948	-	639	WP_003898730.1	lipid droplet-associated protein	-
CP439_RS06080	1236038..1237045	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
CP439_RS06085	1237062..1238045	-	984	WP_003898731.1	hypothetical protein	-
CP439_RS06090	1238108..1239181	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
CP439_RS06095	1239269..1239466	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
CP439_RS06100	1239463..1239837	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
CP439_RS06105	1240040..1240738	+	699	WP_003898733.1	hypothetical protein	-
CP439_RS06110	1240856..1241041	+	186	WP_003901093.1	hypothetical protein	-
CP439_RS06115	1240968..1241243	-	276	WP_003405867.1	hypothetical protein	-
CP439_RS06120	1241486..1241809	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
CP439_RS06125	1241824..1242534	-	711	WP_003911399.1	hypothetical protein	-
CP439_RS21740	1242556..1242765	+	210	WP_003911400.1	hypothetical protein	-
CP439_RS06130	1242717..1243424	-	708	Protein_1162	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T82292 WP_003405865.1 NZ_CP023583:1239463-1239837 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T82292 NZ_CP023583:1239463-1239837 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT82292 WP_003405863.1 NZ_CP023583:1239269-1239466 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT82292 NZ_CP023583:1239269-1239466 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07