Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2743185..2743388 | Replicon | chromosome |
| Accession | NZ_CP023569 | ||
| Organism | Enterobacter hormaechei strain BW | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2743192..2743295 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2743185..2743388 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPT31_RS12990 | 2738336..2738764 | + | 429 | WP_121926622.1 | regulator | - |
| CPT31_RS12995 | 2738761..2738913 | + | 153 | WP_049125852.1 | DUF1317 family protein | - |
| CPT31_RS13000 | 2738910..2739569 | + | 660 | WP_161503857.1 | DNA methyltransferase | - |
| CPT31_RS13005 | 2739566..2739784 | + | 219 | WP_161503858.1 | hypothetical protein | - |
| CPT31_RS13010 | 2739781..2740296 | + | 516 | WP_161503859.1 | HNH endonuclease | - |
| CPT31_RS13015 | 2740280..2740597 | + | 318 | WP_161503860.1 | hypothetical protein | - |
| CPT31_RS13020 | 2740594..2740785 | + | 192 | WP_161503861.1 | DUF1382 family protein | - |
| CPT31_RS13025 | 2740877..2741089 | + | 213 | WP_161503862.1 | TraR/DksA family transcriptional regulator | - |
| CPT31_RS13030 | 2741146..2741667 | + | 522 | WP_049125635.1 | hypothetical protein | - |
| CPT31_RS13035 | 2741788..2742060 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| CPT31_RS13040 | 2742029..2743114 | + | 1086 | WP_161503863.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2743185..2743388 | + | 204 | - | - | Antitoxin |
| - | 2743192..2743295 | - | 104 | - | - | Toxin |
| CPT31_RS13045 | 2743437..2743775 | - | 339 | WP_003859787.1 | YebY family protein | - |
| CPT31_RS13050 | 2743792..2744661 | - | 870 | WP_045341273.1 | copper homeostasis membrane protein CopD | - |
| CPT31_RS13055 | 2744663..2745034 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| CPT31_RS13060 | 2745172..2745402 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| CPT31_RS13065 | 2745514..2746164 | + | 651 | WP_045341276.1 | carbon-nitrogen hydrolase family protein | - |
| CPT31_RS13070 | 2746189..2746851 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2679885..2749634 | 69749 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81649 NZ_CP023569:c2743295-2743192 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT81649 NZ_CP023569:2743185-2743388 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
