Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1238186..1238457 | Replicon | chromosome |
| Accession | NZ_CP023531 | ||
| Organism | Escherichia coli strain FDAARGOS_401 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1238316..1238419 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1238186..1238457 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO703_RS06890 | 1234741..1235403 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CO703_RS06895 | 1235427..1236083 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CO703_RS06900 | 1236185..1236415 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CO703_RS06905 | 1236554..1236928 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CO703_RS06910 | 1236932..1237804 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CO703_RS06915 | 1237817..1238158 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1238186..1238457 | - | 272 | - | - | Antitoxin |
| - | 1238316..1238419 | + | 104 | - | - | Toxin |
| CO703_RS06920 | 1238554..1239210 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| CO703_RS06925 | 1239211..1239402 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CO703_RS06930 | 1239507..1239743 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CO703_RS06935 | 1239861..1241300 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81523 NZ_CP023531:1238316-1238419 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT81523 NZ_CP023531:c1238457-1238186 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
