Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2497786..2497926 | Replicon | chromosome |
| Accession | NZ_CP023527 | ||
| Organism | Citrobacter koseri strain FDAARGOS_393 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2497788..2497891 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2497786..2497926 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO700_RS12155 | 2493672..2494781 | + | 1110 | WP_060816006.1 | recombinase RecT | - |
| CO700_RS12160 | 2494816..2495160 | + | 345 | WP_060816005.1 | hypothetical protein | - |
| CO700_RS12165 | 2495153..2495761 | + | 609 | WP_060816004.1 | hypothetical protein | - |
| CO700_RS12170 | 2495751..2496023 | + | 273 | WP_060816003.1 | hypothetical protein | - |
| CO700_RS12175 | 2496031..2496270 | + | 240 | WP_060816002.1 | DUF4060 family protein | - |
| CO700_RS12180 | 2496332..2496604 | + | 273 | WP_060816001.1 | excisionase | - |
| CO700_RS12185 | 2496579..2497658 | + | 1080 | WP_060816000.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2497786..2497926 | + | 141 | - | - | Antitoxin |
| - | 2497788..2497891 | - | 104 | - | - | Toxin |
| CO700_RS12195 | 2498047..2498385 | - | 339 | WP_012132024.1 | YebY family protein | - |
| CO700_RS12200 | 2498402..2499277 | - | 876 | WP_077956859.1 | copper homeostasis membrane protein CopD | - |
| CO700_RS12205 | 2499277..2499651 | - | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| CO700_RS12210 | 2499792..2500022 | + | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| CO700_RS12215 | 2500128..2500784 | + | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| CO700_RS12220 | 2500808..2501470 | + | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2442585..2503527 | 60942 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81490 NZ_CP023527:c2497891-2497788 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT81490 NZ_CP023527:2497786-2497926 [Citrobacter koseri]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
