Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1882575..1882740 | Replicon | chromosome |
| Accession | NZ_CP023525 | ||
| Organism | Cedecea neteri strain FDAARGOS_392 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1882637..1882740 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1882575..1882740 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO704_RS08970 | 1878930..1879601 | - | 672 | WP_061272213.1 | exodeoxyribonuclease X | - |
| CO704_RS08975 | 1879631..1880359 | - | 729 | WP_061272215.1 | carbon-nitrogen hydrolase family protein | - |
| CO704_RS08980 | 1880489..1880719 | - | 231 | WP_061272217.1 | DNA polymerase III subunit theta | - |
| CO704_RS08985 | 1880861..1881235 | + | 375 | WP_061272218.1 | CopC domain-containing protein YobA | - |
| CO704_RS08990 | 1881241..1882116 | + | 876 | WP_061272219.1 | copper homeostasis membrane protein CopD | - |
| CO704_RS08995 | 1882145..1882489 | + | 345 | WP_061272222.1 | YebY family protein | - |
| - | 1882575..1882740 | - | 166 | - | - | Antitoxin |
| - | 1882637..1882740 | + | 104 | - | - | Toxin |
| CO704_RS09000 | 1883031..1884527 | + | 1497 | WP_061272312.1 | SulP family inorganic anion transporter | - |
| CO704_RS09005 | 1884783..1886030 | + | 1248 | WP_061272225.1 | MFS transporter | - |
| CO704_RS09010 | 1886045..1886578 | + | 534 | WP_174522169.1 | GNAT family N-acetyltransferase | - |
| CO704_RS09015 | 1886595..1886786 | - | 192 | WP_061272228.1 | YebW family protein | - |
| CO704_RS09020 | 1887027..1887266 | - | 240 | WP_008453991.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81472 NZ_CP023525:1882637-1882740 [Cedecea neteri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 166 bp
>AT81472 NZ_CP023525:c1882740-1882575 [Cedecea neteri]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAGAA
AAAAGC
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAGAA
AAAAGC
