Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 74645..75161 Replicon plasmid unnamed
Accession NZ_CP023524
Organism Burkholderia gladioli pv. gladioli strain FDAARGOS_389

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag CO712_RS35920 Protein ID WP_096753051.1
Coordinates 74645..74926 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag CO712_RS35925 Protein ID WP_096753052.1
Coordinates 74916..75161 (-) Length 82 a.a.

Genomic Context

CO712_RS35930CO712_RS35885CO712_RS35890CO712_RS35900CO712_RS35905CO712_RS35910CO712_RS35915CO712_RS35920CO712_RS35925CO712_RS35935CO712_RS35940CO712_RS35945
Location: 75426..76493 (1068 bp)
Type: Others
Protein ID: WP_096753053.1
Location: 70469..72298 (1830 bp)
Type: Others
Protein ID: WP_096753046.1
Location: 72301..72639 (339 bp)
Type: Others
Protein ID: WP_036057562.1
Location: 73175..73417 (243 bp)
Type: Others
Protein ID: WP_036057558.1
Location: 73431..73715 (285 bp)
Type: Others
Protein ID: WP_096753048.1
Location: 73790..74002 (213 bp)
Type: Others
Protein ID: WP_096753049.1
Location: 74254..74496 (243 bp)
Type: Others
Protein ID: WP_096753050.1
Location: 74645..74926 (282 bp)
Type: Toxin
Protein ID: WP_096753051.1
Location: 74916..75161 (246 bp)
Type: Antitoxin
Protein ID: WP_096753052.1
Location: 76578..76862 (285 bp)
Type: Others
Protein ID: WP_036057548.1
Location: 76987..78306 (1320 bp)
Type: Others
Protein ID: WP_096753054.1
Location: 78637..79626 (990 bp)
Type: Others
Protein ID: WP_096753132.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CO712_RS3588570469..72298-1830WP_096753046.1site-specific integrase-
CO712_RS3589072301..72639-339WP_036057562.1hypothetical protein-
CO712_RS3590073175..73417-243WP_036057558.1hypothetical protein-
CO712_RS3590573431..73715-285WP_096753048.1hypothetical protein-
CO712_RS3591073790..74002-213WP_096753049.1hypothetical protein-
CO712_RS3591574254..74496-243WP_096753050.1hypothetical protein-
CO712_RS3592074645..74926-282WP_096753051.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CO712_RS3592574916..75161-246WP_096753052.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
CO712_RS3593075426..76493+1068WP_096753053.1hypothetical protein-
CO712_RS3593576578..76862-285WP_036057548.1hypothetical protein-
CO712_RS3594076987..78306-1320WP_096753054.1replication protein O-
CO712_RS3594578637..79626-990WP_096753132.1ParB N-terminal domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..151925151925


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-85)

Antitoxin

Antitoxin ParD

(4-72)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10916.56 Da        Isoelectric Point: 9.6937

>T81462 WP_096753051.1 NZ_CP023524:c74926-74645 [Burkholderia gladioli pv. gladioli]
MRGKARAVRLTPLAEAGLEDIWAYTCEQYLGEFVAAFDRLARGEWVGGRAVRGPYWRYLVGFPALFYRETADVLNVTRVR
YQRMDVDRHLLRY

Download         Length: 282 bp

>T81462 NZ_CP023524:c74926-74645 [Burkholderia gladioli pv. gladioli]
ATGCGGGGTAAGGCGCGGGCCGTGCGGCTGACGCCCTTGGCCGAGGCCGGCCTCGAGGACATCTGGGCCTACACCTGCGA
GCAGTACCTGGGCGAGTTCGTCGCTGCCTTCGACCGATTGGCGCGCGGCGAATGGGTCGGGGGCCGAGCCGTGCGGGGAC
CCTACTGGCGTTATCTGGTCGGCTTCCCTGCGCTGTTTTATCGAGAGACAGCCGACGTCTTGAATGTCACCCGTGTGCGG
TATCAGCGCATGGACGTGGATCGGCACCTGTTGCGGTATTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8599.66 Da        Isoelectric Point: 7.2028

>AT81462 WP_096753052.1 NZ_CP023524:c75161-74916 [Burkholderia gladioli pv. gladioli]
MPRNTSISLGDHLTQFVDTQVASGRYGSASDVVRAGLRLLETQETELKALQEVLRAGEASGAPAAFDGQAFLARMRAKHA
G

Download         Length: 246 bp

>AT81462 NZ_CP023524:c75161-74916 [Burkholderia gladioli pv. gladioli]
ATGCCGCGGAACACATCGATCTCGCTGGGAGATCACTTGACTCAGTTCGTCGACACACAGGTCGCATCCGGCCGCTATGG
CTCGGCTAGTGACGTGGTGCGCGCCGGGCTGCGCCTGCTGGAGACGCAGGAGACCGAACTGAAGGCGCTGCAGGAGGTGT
TGCGCGCCGGTGAGGCGTCCGGCGCGCCGGCGGCGTTTGACGGCCAGGCGTTCCTCGCTCGCATGCGTGCGAAGCATGCG
GGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References