Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 31890..33607 Replicon plasmid unnamed
Accession NZ_CP023524
Organism Burkholderia gladioli pv. gladioli strain FDAARGOS_389

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag CO712_RS35650 Protein ID WP_096753037.1
Coordinates 32963..33607 (-) Length 215 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag CO712_RS35645 Protein ID WP_096753129.1
Coordinates 31890..32963 (-) Length 358 a.a.

Genomic Context

CO712_RS37220CO712_RS35635CO712_RS35640CO712_RS35645CO712_RS35650CO712_RS35655CO712_RS35660CO712_RS35670CO712_RS35675
Location: 27596..28537 (942 bp)
Type: Others
Protein ID: WP_138110708.1
Location: 28541..30397 (1857 bp)
Type: Others
Protein ID: WP_096753035.1
Location: 30394..31296 (903 bp)
Type: Others
Protein ID: WP_138110710.1
Location: 31890..32963 (1074 bp)
Type: Antitoxin
Protein ID: WP_096753129.1
Location: 32963..33607 (645 bp)
Type: Toxin
Protein ID: WP_096753037.1
Location: 33916..35613 (1698 bp)
Type: Others
Protein ID: WP_096753038.1
Location: 35706..36131 (426 bp)
Type: Others
Protein ID: WP_096753039.1
Location: 37561..37803 (243 bp)
Type: Others
Protein ID: Protein_38
Location: 37812..37994 (183 bp)
Type: Others
Protein ID: Protein_39
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CO712_RS3722027596..28537-942WP_138110708.1hypothetical protein-
CO712_RS3563528541..30397-1857WP_096753035.1hypothetical protein-
CO712_RS3564030394..31296-903WP_138110710.1hypothetical protein-
CO712_RS3564531890..32963-1074WP_096753129.1macro domain-containing proteinAntitoxin
CO712_RS3565032963..33607-645WP_096753037.1DUF4433 domain-containing proteinToxin
CO712_RS3565533916..35613-1698WP_096753038.1MCP four helix bundle domain-containing protein-
CO712_RS3566035706..36131-426WP_096753039.1hypothetical protein-
CO712_RS3567037561..37803-243Protein_38transposase-
CO712_RS3567537812..37994-183Protein_39helix-turn-helix domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..151925151925


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(15-214)

Antitoxin

Macro domain

(18-129)


Sequences

Toxin        


Download         Length: 215 a.a.        Molecular weight: 24799.62 Da        Isoelectric Point: 9.0011

>T81461 WP_096753037.1 NZ_CP023524:c33607-32963 [Burkholderia gladioli pv. gladioli]
MATYQRLNAQNAYIWRIVHRQNLPWILDHGLVCASSGLLDPNFVPIGNADLISRRRLRAVPVAPGGTLSDYVPFYFTPFS
PMMYNIHTGRAVRQQRNEDICMLVSRLPVLQQMGIPFVFTDRHAYTQLARFFRDLGELGHIDWPLLQARNFKRNPDDPEQ
IERYQAEALVYHHLPVNGLTAIVCYTEQVKVELEQLVAARRLSVTVRALPHWYF

Download         Length: 645 bp

>T81461 NZ_CP023524:c33607-32963 [Burkholderia gladioli pv. gladioli]
ATGGCGACATACCAGCGGCTCAACGCCCAGAACGCGTACATTTGGCGCATCGTTCATCGCCAGAATCTGCCGTGGATTCT
GGATCACGGGCTGGTGTGCGCGAGCAGCGGACTCCTCGACCCTAATTTCGTGCCGATCGGCAATGCGGATCTGATCAGCC
GGCGTAGGCTCCGAGCTGTGCCCGTCGCGCCTGGCGGAACGCTGAGTGACTACGTGCCATTTTATTTCACGCCGTTTTCG
CCAATGATGTACAACATTCATACTGGGCGGGCCGTGCGCCAGCAGCGCAACGAGGACATCTGCATGCTCGTCAGCAGGTT
GCCGGTCCTTCAGCAAATGGGCATACCGTTTGTCTTTACCGATCGACATGCATACACGCAGTTGGCGCGGTTCTTTCGCG
ATCTGGGGGAGTTGGGCCATATCGACTGGCCATTACTTCAGGCGCGGAACTTTAAGCGCAACCCGGACGATCCCGAGCAA
ATCGAACGCTACCAAGCTGAGGCACTGGTCTATCATCATCTGCCGGTGAACGGACTCACTGCGATTGTGTGCTATACCGA
ACAGGTGAAAGTTGAACTGGAGCAGTTGGTGGCCGCGCGTCGTTTGAGTGTGACGGTGCGAGCGCTCCCCCACTGGTACT
TTTGA

Antitoxin


Download         Length: 358 a.a.        Molecular weight: 40369.40 Da        Isoelectric Point: 6.1183

>AT81461 WP_096753129.1 NZ_CP023524:c32963-31890 [Burkholderia gladioli pv. gladioli]
MITYTQGNLLDAPAEALVNTVNTVGVMGKGIALMFKEKFPENFRQYALACKEGRVHTGTVFVTERMELIGPKWIVNFPTK
RHWRAPSRLEWIVDGLADLRHFIEKEHIRSIAIPPLGAGNGGLDWPTVKAEIDAALGDMVDTEILVYEPTGRYQNVSKRE
GVEKLTPARALIAELVRRYWILGMECTLLEIQKLAWFLERTIERTDAPNPLELKFVAHTYGPYANRLDHLLNNLDGSYLH
CDKRIADAGPLDVIWFDDRRVDMLAAYLKSGEMRPYLPALEETASLIDGFESPFGLELLASLDWLLARDGRDPNLDSIRA
GFSAWPGGESAGRRKYRLFDERAIQIGLRRLTEHVPA

Download         Length: 1074 bp

>AT81461 NZ_CP023524:c32963-31890 [Burkholderia gladioli pv. gladioli]
ATGATTACATATACCCAAGGCAACCTGCTCGACGCTCCTGCCGAGGCGCTCGTCAACACGGTCAACACGGTTGGCGTGAT
GGGCAAAGGCATCGCGCTGATGTTTAAAGAAAAGTTTCCTGAGAACTTCCGCCAGTACGCGCTTGCCTGCAAAGAAGGGC
GCGTGCACACCGGCACGGTGTTCGTGACGGAACGCATGGAACTGATTGGGCCAAAGTGGATCGTCAACTTTCCGACTAAG
CGCCATTGGCGTGCGCCTTCACGGCTTGAGTGGATCGTCGACGGCCTAGCCGATCTACGCCACTTCATCGAAAAAGAACA
CATCCGATCGATCGCTATACCGCCGCTCGGCGCGGGCAATGGGGGTTTGGACTGGCCTACCGTGAAGGCCGAAATCGACG
CGGCGCTCGGCGATATGGTGGACACGGAGATTTTGGTCTACGAACCAACTGGCAGGTATCAGAATGTCTCAAAACGTGAG
GGTGTAGAGAAGCTGACCCCCGCCCGTGCATTGATCGCCGAGCTTGTGCGACGATACTGGATTCTTGGCATGGAATGCAC
TTTGCTTGAGATTCAGAAGCTCGCGTGGTTCCTCGAGCGCACGATCGAGCGGACCGATGCGCCAAACCCGCTCGAGCTCA
AGTTTGTCGCACATACCTATGGGCCGTATGCGAATCGCCTAGATCATCTGTTGAACAATCTTGATGGCAGTTATTTGCAC
TGCGACAAGCGCATCGCCGACGCTGGCCCACTCGATGTCATTTGGTTCGACGACCGTCGAGTCGACATGCTTGCGGCGTA
CCTGAAGAGCGGCGAGATGAGGCCGTATTTGCCCGCTCTTGAGGAGACCGCCTCTTTGATCGACGGATTTGAATCACCGT
TCGGGCTTGAGCTTCTCGCGTCGTTAGATTGGTTGTTGGCCCGCGACGGGCGCGATCCCAATCTCGATAGCATTCGTGCG
GGCTTCTCGGCGTGGCCGGGTGGCGAGTCGGCGGGGCGGCGGAAATATCGACTGTTCGACGAGAGGGCAATTCAGATTGG
TTTGAGACGCCTGACCGAGCACGTCCCTGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
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References