Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1680629..1680864 | Replicon | chromosome |
| Accession | NZ_CP023504 | ||
| Organism | Citrobacter werkmanii strain FDAARGOS_364 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1680755..1680858 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1680629..1680864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO701_RS08230 | 1677175..1677837 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| CO701_RS08235 | 1677861..1678517 | - | 657 | WP_096756687.1 | carbon-nitrogen hydrolase family protein | - |
| CO701_RS08240 | 1678624..1678848 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| CO701_RS08245 | 1678993..1679367 | + | 375 | WP_096756689.1 | CopC domain-containing protein YobA | - |
| CO701_RS08250 | 1679372..1680244 | + | 873 | WP_096756690.1 | copper homeostasis membrane protein CopD | - |
| CO701_RS08255 | 1680261..1680599 | + | 339 | WP_096756691.1 | YebY family protein | - |
| - | 1680629..1680864 | - | 236 | - | - | Antitoxin |
| - | 1680755..1680858 | + | 104 | - | - | Toxin |
| CO701_RS08260 | 1681013..1681654 | + | 642 | WP_096756692.1 | protein-serine/threonine phosphatase | - |
| CO701_RS08265 | 1681655..1681846 | - | 192 | WP_045444034.1 | YebW family protein | - |
| CO701_RS08270 | 1681949..1682185 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| CO701_RS08275 | 1682286..1683707 | - | 1422 | WP_096759376.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81414 NZ_CP023504:1680755-1680858 [Citrobacter werkmanii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT81414 NZ_CP023504:c1680864-1680629 [Citrobacter werkmanii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
