81352

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2399080..2399162 Replicon chromosome
Accession NZ_CP023484
Organism Dickeya sp. Secpp 1600

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2399082..2399162 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2399080..2399162 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPA59_RS10745 2395448..2396821 - 1374 WP_049842555.1 pectate lyase -
CPA59_RS22870 2397634..2398200 + 567 WP_159077935.1 hypothetical protein -
CPA59_RS22875 2398259..2398558 + 300 WP_159077936.1 hypothetical protein -
- 2399080..2399162 + 83 - - Antitoxin
- 2399082..2399162 - 81 - - Toxin
CPA59_RS10755 2399332..2399670 - 339 WP_038918972.1 YebY family protein -
CPA59_RS10760 2400185..2400628 + 444 WP_107759323.1 hypothetical protein -
CPA59_RS10765 2400971..2401219 + 249 WP_038918974.1 GlsB/YeaQ/YmgE family stress response membrane protein -
CPA59_RS10770 2401334..2403076 - 1743 WP_107759325.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T81352 NZ_CP023484:c2399162-2399082 [Dickeya sp. Secpp 1600]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT81352 NZ_CP023484:2399080-2399162 [Dickeya sp. Secpp 1600]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References