Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) DhiAT/dnstrm_HI1420(antitoxin)
Location 1732313..1733066 Replicon chromosome
Accession NZ_CP023484
Organism Dickeya sp. Secpp 1600

Toxin (Protein)


Gene name dhiT Uniprot ID -
Locus tag CPA59_RS07765 Protein ID WP_107759008.1
Coordinates 1732313..1732570 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name dhiA Uniprot ID A0A2K8QKC0
Locus tag CPA59_RS07770 Protein ID WP_038918520.1
Coordinates 1732578..1733066 (+) Length 163 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPA59_RS07755 1729088..1731238 - 2151 WP_049854965.1 formate dehydrogenase subunit alpha -
CPA59_RS07760 1731273..1731815 - 543 WP_107759007.1 4Fe-4S dicluster domain-containing protein -
CPA59_RS07765 1732313..1732570 + 258 WP_107759008.1 DUF4160 domain-containing protein Toxin
CPA59_RS07770 1732578..1733066 + 489 WP_038918520.1 addiction module antitoxin Antitoxin
CPA59_RS07775 1733151..1733648 - 498 WP_107759009.1 hydrogenase maturation peptidase HycI -
CPA59_RS07780 1733641..1734039 - 399 WP_107759010.1 formate hydrogenlyase maturation HycH family protein -
CPA59_RS07785 1734036..1734827 - 792 WP_038918522.1 NADH-quinone oxidoreductase subunit B family protein -
CPA59_RS07790 1734824..1735393 - 570 WP_039691199.1 hydrogenase 4 subunit H -
CPA59_RS07795 1735404..1737131 - 1728 WP_038918525.1 hydrogenase large subunit -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(9-74)

Antitoxin

(79-157)


Sequences


Toxin        


Download         Length: 86 a.a.        Molecular weight: 9995.55 Da        Isoelectric Point: 8.1489

>T81351 WP_107759008.1 NZ_CP023484:1732313-1732570 [Dickeya sp. Secpp 1600]
MPEIDRLAGLIFHLYFYDDERHHLPHVHVCYGNHELIISIRTGTEIEGYLPNNKRKMALAHIRAHREQLLSMWERAVVGR
NPGKL

Download         Length: 258 bp

>T81351 NZ_CP023484:1732313-1732570 [Dickeya sp. Secpp 1600]
ATGCCTGAGATTGACAGACTGGCAGGGCTAATTTTCCATTTGTACTTTTACGATGATGAACGGCACCACTTGCCGCATGT
GCATGTCTGCTACGGCAACCATGAGCTGATCATCAGTATTCGTACTGGAACAGAGATCGAAGGATATCTGCCGAATAACA
AGCGCAAGATGGCGCTTGCGCATATCAGAGCCCATCGGGAACAACTGCTGAGTATGTGGGAGCGGGCGGTAGTGGGGAGA
AATCCGGGAAAACTGTGA

Antitoxin


Download         Length: 163 a.a.        Molecular weight: 17940.51 Da        Isoelectric Point: 6.9795

>AT81351 WP_038918520.1 NZ_CP023484:1732578-1733066 [Dickeya sp. Secpp 1600]
MHKIVEVDVIGDFSLRLTYEDGLVCDINLYQYASSPVFSNASLFIKFGLLPDGSLEWSPDIKISASELRKKGEYVSHTLA
VREKNFADVISRAFYDAVIENRPEILQAALKIAVEKHGNSTVAKEAGAKSRTSLYKSLNKNTHVSLATVVSLAHTVLQLE
EK

Download         Length: 489 bp

>AT81351 NZ_CP023484:1732578-1733066 [Dickeya sp. Secpp 1600]
ATGCATAAAATCGTGGAAGTTGACGTGATTGGCGACTTTTCGTTGCGCCTGACCTATGAGGATGGTTTGGTTTGCGACAT
CAATCTTTATCAATATGCCTCCAGCCCGGTATTTTCGAACGCCAGCCTATTTATCAAGTTTGGGCTGCTGCCGGATGGTT
CGCTGGAATGGTCGCCGGATATTAAGATTTCCGCGTCGGAATTGCGGAAAAAAGGGGAGTATGTCAGCCACACGCTTGCG
GTGCGAGAAAAGAACTTCGCTGATGTCATCTCTCGCGCCTTCTATGATGCCGTGATTGAGAACCGGCCGGAAATTCTGCA
AGCGGCGTTGAAAATCGCGGTAGAAAAACATGGCAACAGCACAGTAGCCAAAGAGGCGGGGGCGAAAAGTCGCACCAGTC
TGTATAAGTCGCTGAATAAAAATACCCATGTCAGTCTTGCGACGGTGGTCAGCCTGGCGCATACCGTGCTGCAACTGGAA
GAGAAGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A2K8QKC0

References