Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | DhiAT/dnstrm_HI1420(antitoxin) |
Location | 1732313..1733066 | Replicon | chromosome |
Accession | NZ_CP023484 | ||
Organism | Dickeya sp. Secpp 1600 |
Toxin (Protein)
Gene name | dhiT | Uniprot ID | - |
Locus tag | CPA59_RS07765 | Protein ID | WP_107759008.1 |
Coordinates | 1732313..1732570 (+) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | dhiA | Uniprot ID | A0A2K8QKC0 |
Locus tag | CPA59_RS07770 | Protein ID | WP_038918520.1 |
Coordinates | 1732578..1733066 (+) | Length | 163 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CPA59_RS07755 | 1729088..1731238 | - | 2151 | WP_049854965.1 | formate dehydrogenase subunit alpha | - |
CPA59_RS07760 | 1731273..1731815 | - | 543 | WP_107759007.1 | 4Fe-4S dicluster domain-containing protein | - |
CPA59_RS07765 | 1732313..1732570 | + | 258 | WP_107759008.1 | DUF4160 domain-containing protein | Toxin |
CPA59_RS07770 | 1732578..1733066 | + | 489 | WP_038918520.1 | addiction module antitoxin | Antitoxin |
CPA59_RS07775 | 1733151..1733648 | - | 498 | WP_107759009.1 | hydrogenase maturation peptidase HycI | - |
CPA59_RS07780 | 1733641..1734039 | - | 399 | WP_107759010.1 | formate hydrogenlyase maturation HycH family protein | - |
CPA59_RS07785 | 1734036..1734827 | - | 792 | WP_038918522.1 | NADH-quinone oxidoreductase subunit B family protein | - |
CPA59_RS07790 | 1734824..1735393 | - | 570 | WP_039691199.1 | hydrogenase 4 subunit H | - |
CPA59_RS07795 | 1735404..1737131 | - | 1728 | WP_038918525.1 | hydrogenase large subunit | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 9995.55 Da Isoelectric Point: 8.1489
>T81351 WP_107759008.1 NZ_CP023484:1732313-1732570 [Dickeya sp. Secpp 1600]
MPEIDRLAGLIFHLYFYDDERHHLPHVHVCYGNHELIISIRTGTEIEGYLPNNKRKMALAHIRAHREQLLSMWERAVVGR
NPGKL
MPEIDRLAGLIFHLYFYDDERHHLPHVHVCYGNHELIISIRTGTEIEGYLPNNKRKMALAHIRAHREQLLSMWERAVVGR
NPGKL
Download Length: 258 bp
>T81351 NZ_CP023484:1732313-1732570 [Dickeya sp. Secpp 1600]
ATGCCTGAGATTGACAGACTGGCAGGGCTAATTTTCCATTTGTACTTTTACGATGATGAACGGCACCACTTGCCGCATGT
GCATGTCTGCTACGGCAACCATGAGCTGATCATCAGTATTCGTACTGGAACAGAGATCGAAGGATATCTGCCGAATAACA
AGCGCAAGATGGCGCTTGCGCATATCAGAGCCCATCGGGAACAACTGCTGAGTATGTGGGAGCGGGCGGTAGTGGGGAGA
AATCCGGGAAAACTGTGA
ATGCCTGAGATTGACAGACTGGCAGGGCTAATTTTCCATTTGTACTTTTACGATGATGAACGGCACCACTTGCCGCATGT
GCATGTCTGCTACGGCAACCATGAGCTGATCATCAGTATTCGTACTGGAACAGAGATCGAAGGATATCTGCCGAATAACA
AGCGCAAGATGGCGCTTGCGCATATCAGAGCCCATCGGGAACAACTGCTGAGTATGTGGGAGCGGGCGGTAGTGGGGAGA
AATCCGGGAAAACTGTGA
Antitoxin
Download Length: 163 a.a. Molecular weight: 17940.51 Da Isoelectric Point: 6.9795
>AT81351 WP_038918520.1 NZ_CP023484:1732578-1733066 [Dickeya sp. Secpp 1600]
MHKIVEVDVIGDFSLRLTYEDGLVCDINLYQYASSPVFSNASLFIKFGLLPDGSLEWSPDIKISASELRKKGEYVSHTLA
VREKNFADVISRAFYDAVIENRPEILQAALKIAVEKHGNSTVAKEAGAKSRTSLYKSLNKNTHVSLATVVSLAHTVLQLE
EK
MHKIVEVDVIGDFSLRLTYEDGLVCDINLYQYASSPVFSNASLFIKFGLLPDGSLEWSPDIKISASELRKKGEYVSHTLA
VREKNFADVISRAFYDAVIENRPEILQAALKIAVEKHGNSTVAKEAGAKSRTSLYKSLNKNTHVSLATVVSLAHTVLQLE
EK
Download Length: 489 bp
>AT81351 NZ_CP023484:1732578-1733066 [Dickeya sp. Secpp 1600]
ATGCATAAAATCGTGGAAGTTGACGTGATTGGCGACTTTTCGTTGCGCCTGACCTATGAGGATGGTTTGGTTTGCGACAT
CAATCTTTATCAATATGCCTCCAGCCCGGTATTTTCGAACGCCAGCCTATTTATCAAGTTTGGGCTGCTGCCGGATGGTT
CGCTGGAATGGTCGCCGGATATTAAGATTTCCGCGTCGGAATTGCGGAAAAAAGGGGAGTATGTCAGCCACACGCTTGCG
GTGCGAGAAAAGAACTTCGCTGATGTCATCTCTCGCGCCTTCTATGATGCCGTGATTGAGAACCGGCCGGAAATTCTGCA
AGCGGCGTTGAAAATCGCGGTAGAAAAACATGGCAACAGCACAGTAGCCAAAGAGGCGGGGGCGAAAAGTCGCACCAGTC
TGTATAAGTCGCTGAATAAAAATACCCATGTCAGTCTTGCGACGGTGGTCAGCCTGGCGCATACCGTGCTGCAACTGGAA
GAGAAGTAA
ATGCATAAAATCGTGGAAGTTGACGTGATTGGCGACTTTTCGTTGCGCCTGACCTATGAGGATGGTTTGGTTTGCGACAT
CAATCTTTATCAATATGCCTCCAGCCCGGTATTTTCGAACGCCAGCCTATTTATCAAGTTTGGGCTGCTGCCGGATGGTT
CGCTGGAATGGTCGCCGGATATTAAGATTTCCGCGTCGGAATTGCGGAAAAAAGGGGAGTATGTCAGCCACACGCTTGCG
GTGCGAGAAAAGAACTTCGCTGATGTCATCTCTCGCGCCTTCTATGATGCCGTGATTGAGAACCGGCCGGAAATTCTGCA
AGCGGCGTTGAAAATCGCGGTAGAAAAACATGGCAACAGCACAGTAGCCAAAGAGGCGGGGGCGAAAAGTCGCACCAGTC
TGTATAAGTCGCTGAATAAAAATACCCATGTCAGTCTTGCGACGGTGGTCAGCCTGGCGCATACCGTGCTGCAACTGGAA
GAGAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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