Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910012..1910159 | Replicon | chromosome |
| Accession | NZ_CP023478 | ||
| Organism | Klebsiella quasipneumoniae strain KPC142 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910053..1910155 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910012..1910159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPC142_RS09560 | 1905147..1907207 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| KPC142_RS09565 | 1907211..1907870 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| KPC142_RS09570 | 1907949..1908179 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KPC142_RS09575 | 1908292..1908666 | + | 375 | WP_106938921.1 | CopC domain-containing protein YobA | - |
| KPC142_RS09580 | 1908670..1909539 | + | 870 | WP_106938922.1 | copper homeostasis membrane protein CopD | - |
| KPC142_RS09585 | 1909556..1909894 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1910012..1910159 | - | 148 | - | - | Antitoxin |
| - | 1910053..1910155 | + | 103 | - | - | Toxin |
| KPC142_RS27125 | 1910552..1910695 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| KPC142_RS09595 | 1910799..1911767 | - | 969 | WP_117124423.1 | VirK/YbjX family protein | - |
| KPC142_RS09600 | 1911924..1912577 | + | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| KPC142_RS09605 | 1912574..1912765 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KPC142_RS09610 | 1912863..1913102 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KPC142_RS09615 | 1913219..1914652 | - | 1434 | WP_106938923.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T81325 NZ_CP023478:1910053-1910155 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT81325 NZ_CP023478:c1910159-1910012 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
