Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2379119..2379212 Replicon chromosome
Accession NZ_CP023467
Organism Dickeya dadantii strain DSM 18020

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2379121..2379212 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2379119..2379212 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CO076_RS10850 2375149..2376246 - 1098 WP_038911166.1 HDOD domain-containing protein -
CO076_RS10855 2376237..2377352 - 1116 WP_038911167.1 ATP-binding protein -
CO076_RS10860 2377345..2378469 - 1125 WP_038901141.1 FIST C-terminal domain-containing protein -
- 2379119..2379212 + 94 - - Antitoxin
- 2379121..2379212 - 92 - - Toxin
CO076_RS10865 2379371..2379709 - 339 WP_038911168.1 YebY family protein -
CO076_RS10870 2380068..2380511 + 444 WP_038911170.1 hypothetical protein -
CO076_RS10875 2380851..2381099 + 249 WP_013317833.1 GlsB/YeaQ/YmgE family stress response membrane protein -
CO076_RS10880 2381209..2382951 - 1743 WP_038911171.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 92 bp

>T81298 NZ_CP023467:c2379212-2379121 [Dickeya dadantii]
AGCCTGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTT
CGGTCTTTTTTT

Antitoxin


Download         Length: 94 bp

>AT81298 NZ_CP023467:2379119-2379212 [Dickeya dadantii]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTGTTGCAGGCT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References