Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Fic(toxin)
Location 2965652..2966217 Replicon chromosome
Accession NZ_CP023407
Organism Streptomyces fungicidicus strain TXX3120

Toxin (Protein)


Gene name doc Uniprot ID -
Locus tag CNQ36_RS13380 Protein ID WP_121546168.1
Coordinates 2965652..2966020 (-) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag CNQ36_RS13385 Protein ID WP_121546169.1
Coordinates 2966020..2966217 (-) Length 66 a.a.

Genomic Context

CNQ36_RS13360CNQ36_RS13395CNQ36_RS13365CNQ36_RS13370CNQ36_RS13375CNQ36_RS13380CNQ36_RS13385CNQ36_RS13390CNQ36_RS13400
Location: 2960728..2961705 (978 bp)
Type: Others
Protein ID: WP_121546166.1
Location: 2968016..2969275 (1260 bp)
Type: Others
Protein ID: WP_163013258.1
Location: 2961702..2962493 (792 bp)
Type: Others
Protein ID: WP_121546167.1
Location: 2962802..2963443 (642 bp)
Type: Others
Protein ID: WP_040907076.1
Location: 2963728..2965527 (1800 bp)
Type: Others
Protein ID: WP_004930870.1
Location: 2965652..2966020 (369 bp)
Type: Toxin
Protein ID: WP_121546168.1
Location: 2966020..2966217 (198 bp)
Type: Antitoxin
Protein ID: WP_121546169.1
Location: 2966250..2967710 (1461 bp)
Type: Others
Protein ID: WP_121546170.1
Location: 2969292..2970470 (1179 bp)
Type: Others
Protein ID: WP_121546172.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CNQ36_RS133602960728..2961705+978WP_121546166.1glycine betaine ABC transporter substrate-binding protein-
CNQ36_RS133652961702..2962493-792WP_121546167.1hypothetical protein-
CNQ36_RS133702962802..2963443-642WP_040907076.1helix-turn-helix domain-containing protein-
CNQ36_RS133752963728..2965527-1800WP_004930870.1DEAD/DEAH box helicase-
CNQ36_RS133802965652..2966020-369WP_121546168.1Fic family proteinToxin
CNQ36_RS133852966020..2966217-198WP_121546169.1hypothetical proteinAntitoxin
CNQ36_RS133902966250..2967710-1461WP_121546170.1MFS transporter-
CNQ36_RS133952968016..2969275+1260WP_163013258.1hypothetical protein-
CNQ36_RS134002969292..2970470-1179WP_121546172.1SUKH-4 family immunity protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(4-80)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 123 a.a.        Molecular weight: 13745.67 Da        Isoelectric Point: 4.6413

>T81203 WP_121546168.1 NZ_CP023407:c2966020-2965652 [Streptomyces fungicidicus]
MYYLTLPELLNLAKRLGEDVVRDYGLLDSALARPQSSVFGQDAYPDVWQKAAALMESLARNHALVDGNKRLAWYATWVFL
HMNGHPLDPDFDVDEAEQFVLDVCQGALDVPKIAAQLPRFAR

Download         Length: 369 bp

>T81203 NZ_CP023407:c2966020-2965652 [Streptomyces fungicidicus]
ATGTACTACCTCACCTTGCCCGAGTTGCTGAACCTCGCGAAGCGGCTCGGGGAGGACGTGGTGCGCGACTACGGGCTGCT
CGACTCGGCCTTGGCGCGTCCGCAGTCGAGCGTGTTCGGCCAGGACGCCTACCCGGACGTGTGGCAGAAGGCCGCGGCAC
TGATGGAGTCCCTCGCTCGCAACCATGCCCTCGTCGACGGGAACAAGCGCCTCGCCTGGTACGCGACCTGGGTCTTCCTG
CATATGAACGGGCATCCGCTCGACCCGGACTTCGACGTGGACGAGGCGGAGCAGTTCGTGCTGGACGTCTGCCAGGGCGC
ACTGGACGTCCCCAAGATCGCAGCTCAGTTGCCCCGCTTCGCGCGCTGA

Antitoxin


Download         Length: 66 a.a.        Molecular weight: 7349.21 Da        Isoelectric Point: 5.5900

>AT81203 WP_121546169.1 NZ_CP023407:c2966217-2966020 [Streptomyces fungicidicus]
MAGLNLRFTDEELDALRERAAAEGRSMQTFAHDAVIKAINEHSRLFNEAADHVLRASEELNRRLA

Download         Length: 198 bp

>AT81203 NZ_CP023407:c2966217-2966020 [Streptomyces fungicidicus]
ATGGCTGGACTGAACCTGCGGTTTACTGACGAAGAGCTCGATGCCCTGCGTGAGCGTGCGGCTGCGGAAGGGCGCAGCAT
GCAGACCTTCGCGCACGACGCGGTGATCAAGGCCATAAACGAACACTCGAGGCTGTTCAACGAGGCGGCCGACCACGTGC
TGAGGGCCAGCGAAGAGCTGAACCGGAGGCTCGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References