Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2093546..2093814 | Replicon | chromosome |
| Accession | NZ_CP023386 | ||
| Organism | Escherichia coli strain 1190 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2093673..2093776 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2093546..2093814 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ48_RS10590 | 2090099..2090761 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CNQ48_RS10595 | 2090785..2091441 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CNQ48_RS10600 | 2091543..2091773 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CNQ48_RS10605 | 2091912..2092286 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CNQ48_RS10610 | 2092290..2093162 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| CNQ48_RS10615 | 2093175..2093516 | + | 342 | WP_000976485.1 | YebY family protein | - |
| - | 2093546..2093814 | - | 269 | - | - | Antitoxin |
| - | 2093673..2093776 | + | 104 | - | - | Toxin |
| CNQ48_RS10620 | 2093911..2094567 | + | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| CNQ48_RS10625 | 2094568..2094759 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CNQ48_RS10630 | 2094864..2095100 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CNQ48_RS10635 | 2095218..2096657 | - | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2086234..2109654 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81110 NZ_CP023386:2093673-2093776 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT81110 NZ_CP023386:c2093814-2093546 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
