Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3917714..3918549 | Replicon | chromosome |
| Accession | NZ_CP023383 | ||
| Organism | Escherichia coli strain 1223 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | CNQ49_RS20200 | Protein ID | WP_023180999.1 |
| Coordinates | 3918172..3918549 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A167E9A4 |
| Locus tag | CNQ49_RS20195 | Protein ID | WP_023181000.1 |
| Coordinates | 3917714..3918082 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ49_RS20150 | 3913900..3914436 | + | 537 | WP_001000101.1 | DUF4234 domain-containing protein | - |
| CNQ49_RS20155 | 3914512..3914733 | + | 222 | WP_024144968.1 | DUF905 family protein | - |
| CNQ49_RS20165 | 3914824..3915642 | + | 819 | WP_023181002.1 | DUF945 domain-containing protein | - |
| CNQ49_RS20170 | 3915734..3916219 | + | 486 | WP_023181001.1 | antirestriction protein | - |
| CNQ49_RS20180 | 3916235..3916711 | + | 477 | WP_001424026.1 | RadC family protein | - |
| CNQ49_RS20185 | 3916780..3917001 | + | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| CNQ49_RS20190 | 3917020..3917664 | + | 645 | WP_024144967.1 | hypothetical protein | - |
| CNQ49_RS20195 | 3917714..3918082 | + | 369 | WP_023181000.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| CNQ49_RS20200 | 3918172..3918549 | + | 378 | WP_023180999.1 | TA system toxin CbtA family protein | Toxin |
| CNQ49_RS20205 | 3918546..3919034 | + | 489 | WP_000761678.1 | hypothetical protein | - |
| CNQ49_RS20210 | 3919046..3919243 | + | 198 | WP_000839240.1 | DUF957 domain-containing protein | - |
| CNQ49_RS20215 | 3919328..3920194 | + | 867 | WP_021547704.1 | DUF4942 domain-containing protein | - |
| CNQ49_RS20220 | 3920266..3920529 | + | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CNQ49_RS20225 | 3920526..3920852 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CNQ49_RS20230 | 3921316..3922578 | + | 1263 | WP_032161224.1 | integrase arm-type DNA-binding domain-containing protein | - |
| CNQ49_RS20235 | 3922807..3923504 | - | 698 | Protein_3696 | IS1 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 3883623..3971781 | 88158 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14103.15 Da Isoelectric Point: 8.2905
>T81085 WP_023180999.1 NZ_CP023383:3918172-3918549 [Escherichia coli]
MKTLPDTHVREASRCPSPVTIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCTRSQLINSIDILRARRATGLMARENYRTVNNITLGKHPGAKQ
MKTLPDTHVREASRCPSPVTIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCTRSQLINSIDILRARRATGLMARENYRTVNNITLGKHPGAKQ
Download Length: 378 bp
>T81085 NZ_CP023383:3918172-3918549 [Escherichia coli]
ATGAAAACATTACCCGACACGCATGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCACTGGTACGAACCGACCAGCCGGGGTTC
AGCACCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
AAATTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATGAAAACATTACCCGACACGCATGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCACTGGTACGAACCGACCAGCCGGGGTTC
AGCACCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
AAATTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13747.48 Da Isoelectric Point: 5.9618
>AT81085 WP_023181000.1 NZ_CP023383:3917714-3918082 [Escherichia coli]
VSDSLHETNYPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
VSDSLHETNYPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
Download Length: 369 bp
>AT81085 NZ_CP023383:3917714-3918082 [Escherichia coli]
GTGTCAGACTCACTCCATGAAACAAATTATCCCGACGATAACAACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGGGCACGTCTTGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACTCACTCCATGAAACAAATTATCCCGACGATAACAACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGGGCACGTCTTGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|