Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1975671..1975942 | Replicon | chromosome |
| Accession | NZ_CP023371 | ||
| Organism | Escherichia coli strain 1283 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1975801..1975904 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1975671..1975942 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ51_RS10135 | 1972226..1972888 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CNQ51_RS10140 | 1972912..1973568 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CNQ51_RS10145 | 1973670..1973900 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CNQ51_RS10150 | 1974039..1974413 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CNQ51_RS10155 | 1974417..1975289 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| CNQ51_RS10160 | 1975302..1975643 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1975671..1975942 | - | 272 | - | - | Antitoxin |
| - | 1975801..1975904 | + | 104 | - | - | Toxin |
| CNQ51_RS10165 | 1976039..1976695 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CNQ51_RS10170 | 1976696..1976887 | - | 192 | WP_000457842.1 | YebW family protein | - |
| CNQ51_RS10175 | 1976992..1977228 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CNQ51_RS10180 | 1977346..1978785 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81001 NZ_CP023371:1975801-1975904 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT81001 NZ_CP023371:c1975942-1975671 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
