Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2241269..2241540 | Replicon | chromosome |
| Accession | NZ_CP023364 | ||
| Organism | Escherichia coli strain 144 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2241399..2241502 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2241269..2241540 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ53_RS12120 | 2237824..2238486 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CNQ53_RS12125 | 2238510..2239166 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| CNQ53_RS12130 | 2239268..2239498 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CNQ53_RS12135 | 2239637..2240011 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CNQ53_RS12140 | 2240015..2240887 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| CNQ53_RS12145 | 2240900..2241241 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2241269..2241540 | - | 272 | - | - | Antitoxin |
| - | 2241399..2241502 | + | 104 | - | - | Toxin |
| CNQ53_RS12150 | 2241637..2242293 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| CNQ53_RS12155 | 2242294..2242485 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CNQ53_RS12160 | 2242590..2242826 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CNQ53_RS12165 | 2242944..2244383 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2233959..2249770 | 15811 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80931 NZ_CP023364:2241399-2241502 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80931 NZ_CP023364:c2241540-2241269 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
