Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2246486..2246757 | Replicon | chromosome |
| Accession | NZ_CP023353 | ||
| Organism | Escherichia coli strain 746 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2246616..2246719 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2246486..2246757 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ56_RS11320 | 2243041..2243703 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CNQ56_RS11325 | 2243727..2244383 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| CNQ56_RS11330 | 2244485..2244715 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CNQ56_RS11335 | 2244854..2245228 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CNQ56_RS11340 | 2245232..2246104 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| CNQ56_RS11345 | 2246117..2246458 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2246486..2246757 | - | 272 | - | - | Antitoxin |
| - | 2246616..2246719 | + | 104 | - | - | Toxin |
| CNQ56_RS11350 | 2246854..2247510 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| CNQ56_RS11355 | 2247511..2247702 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CNQ56_RS11360 | 2247807..2248043 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CNQ56_RS11365 | 2248161..2249600 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2221990..2262597 | 40607 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80831 NZ_CP023353:2246616-2246719 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80831 NZ_CP023353:c2246757-2246486 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
