Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052061..2052332 | Replicon | chromosome |
| Accession | NZ_CP023349 | ||
| Organism | Escherichia coli strain ETEC-2264 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2052099..2052202 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052061..2052332 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJU63_RS10595 | 2049218..2050657 | + | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CJU63_RS10600 | 2050775..2051011 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CJU63_RS10605 | 2051116..2051307 | + | 192 | WP_001338167.1 | YebW family protein | - |
| CJU63_RS10610 | 2051308..2051964 | - | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| - | 2052061..2052332 | + | 272 | - | - | Antitoxin |
| - | 2052099..2052202 | - | 104 | - | - | Toxin |
| CJU63_RS10615 | 2052360..2052701 | - | 342 | WP_000976492.1 | YebY family protein | - |
| CJU63_RS10620 | 2052714..2053586 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CJU63_RS10625 | 2053590..2053964 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CJU63_RS10630 | 2054103..2054333 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CJU63_RS10635 | 2054435..2055091 | + | 657 | WP_000011669.1 | carbon-nitrogen hydrolase family protein | - |
| CJU63_RS10640 | 2055115..2055777 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80800 NZ_CP023349:c2052202-2052099 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80800 NZ_CP023349:2052061-2052332 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
