Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2086830..2087101 | Replicon | chromosome |
| Accession | NZ_CP023346 | ||
| Organism | Escherichia coli strain ETEC-2265 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2086868..2086971 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2086830..2087101 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJU64_RS10900 | 2083987..2085426 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CJU64_RS10905 | 2085544..2085780 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CJU64_RS10910 | 2085885..2086076 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CJU64_RS10915 | 2086077..2086733 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 2086830..2087101 | + | 272 | - | - | Antitoxin |
| - | 2086868..2086971 | - | 104 | - | - | Toxin |
| CJU64_RS10920 | 2087129..2087470 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CJU64_RS10925 | 2087483..2088355 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CJU64_RS10930 | 2088359..2088733 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CJU64_RS10935 | 2088872..2089102 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CJU64_RS10940 | 2089204..2089860 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CJU64_RS10945 | 2089884..2090546 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80771 NZ_CP023346:c2086971-2086868 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80771 NZ_CP023346:2086830-2087101 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
