Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 952789..953324 Replicon chromosome
Accession NZ_CP023313
Organism Caulobacter vibrioides strain CB2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag CA608_RS04535 Protein ID WP_096032676.1
Coordinates 952789..953076 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag CA608_RS04540 Protein ID WP_096032677.1
Coordinates 953073..953324 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-89)

Antitoxin

Antitoxin ParD

(4-72)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11029.52 Da        Isoelectric Point: 8.0582

>T80719 WP_096032676.1 NZ_CP023313:c953076-952789 [Caulobacter vibrioides]
VSAYRLTPRARYDVREIWAYTVGVWGRRAADRYIRELTKTFEAIAKDPSHGAIAEDLDCRKQIFRSHVIYYAPEDDAVIV
VRVLHQQMDAPSHLN

Download         Length: 288 bp

>T80719 NZ_CP023313:c953076-952789 [Caulobacter vibrioides]
GTGAGCGCCTATCGCCTGACGCCTCGCGCACGATACGACGTGCGCGAAATCTGGGCTTACACGGTCGGCGTCTGGGGACG
TCGCGCAGCGGACCGCTACATCCGTGAGCTTACCAAGACGTTCGAAGCGATCGCCAAGGATCCAAGCCACGGCGCGATCG
CGGAAGACCTGGACTGCCGCAAGCAGATCTTTCGCTCTCACGTCATCTACTACGCGCCCGAGGATGACGCGGTCATTGTG
GTTCGCGTCCTGCACCAGCAGATGGACGCGCCGAGCCACCTCAACTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9150.16 Da        Isoelectric Point: 4.5052

>AT80719 WP_096032677.1 NZ_CP023313:c953324-953073 [Caulobacter vibrioides]
MSKNTSIVLSEHFQSFIAEKIEEGRYGSASEVVRAGLRLLENQEAKLAALRNALKEGWDSGKPEAFDVETFLAEANADYD
AKS

Download         Length: 252 bp

>AT80719 NZ_CP023313:c953324-953073 [Caulobacter vibrioides]
ATGAGCAAGAATACCTCCATCGTGCTCAGCGAGCACTTCCAGTCCTTCATCGCCGAGAAAATCGAGGAAGGTCGCTACGG
CTCGGCCAGCGAGGTCGTGCGCGCCGGACTGAGACTTCTGGAAAATCAGGAAGCCAAACTGGCCGCGCTGCGAAACGCCC
TGAAGGAGGGCTGGGACAGCGGCAAGCCCGAGGCCTTCGACGTGGAGACCTTTCTGGCGGAGGCGAACGCCGACTACGAC
GCCAAGTCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References