Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2808786..2808900 | Replicon | chromosome |
| Accession | NZ_CP023268 | ||
| Organism | Serratia sp. MYb239 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2808787..2808883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2808786..2808900 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLM71_RS13525 | 2803821..2805524 | + | 1704 | WP_105231467.1 | tryptophan 7-halogenase | - |
| CLM71_RS13530 | 2805549..2806640 | + | 1092 | WP_105231468.1 | Rieske 2Fe-2S domain-containing protein | - |
| CLM71_RS13535 | 2806855..2808003 | + | 1149 | WP_105231469.1 | HNH endonuclease | - |
| CLM71_RS13540 | 2808021..2808494 | + | 474 | WP_158684815.1 | YrhA family protein | - |
| - | 2808786..2808900 | + | 115 | - | - | Antitoxin |
| - | 2808787..2808883 | - | 97 | - | - | Toxin |
| CLM71_RS13545 | 2809025..2809366 | - | 342 | WP_105231471.1 | YebY family protein | - |
| CLM71_RS13550 | 2809435..2810316 | - | 882 | WP_105231472.1 | copper homeostasis membrane protein CopD | - |
| CLM71_RS13555 | 2810320..2810703 | - | 384 | WP_105231473.1 | CopC domain-containing protein YobA | - |
| CLM71_RS13560 | 2811128..2811649 | - | 522 | WP_105231474.1 | non-heme ferritin | - |
| CLM71_RS13565 | 2812037..2812267 | + | 231 | WP_105231475.1 | DNA polymerase III subunit theta | - |
| CLM71_RS13570 | 2812307..2813266 | - | 960 | WP_105231476.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T80678 NZ_CP023268:c2808883-2808787 [Serratia sp. MYb239]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT80678 NZ_CP023268:2808786-2808900 [Serratia sp. MYb239]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
