Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 155621..156576 Replicon plasmid unnamed1
Accession NZ_CP023205
Organism Burkholderia glumae strain 336gr-1

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag CG017_RS29020 Protein ID WP_017924249.1
Coordinates 155621..156154 (-) Length 178 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag CG017_RS29025 Protein ID WP_017924250.1
Coordinates 156151..156576 (-) Length 142 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CG017_RS28985 151025..151842 + 818 WP_085962419.1 IS5-like element ISBugl2 family transposase -
CG017_RS28990 (CG017_05701) 151852..153687 - 1836 WP_012732711.1 site-specific integrase -
CG017_RS28995 (CG017_05702) 153690..154031 - 342 WP_012732710.1 hypothetical protein -
CG017_RS29000 (CG017_05703) 154088..154333 - 246 WP_127913916.1 hypothetical protein -
CG017_RS29005 (CG017_05704) 154330..154572 - 243 WP_124837682.1 hypothetical protein -
CG017_RS29010 (CG017_05705) 154586..154870 - 285 WP_017432347.1 hypothetical protein -
CG017_RS29015 155263..155460 - 198 WP_127840952.1 hypothetical protein -
CG017_RS29020 (CG017_05706) 155621..156154 - 534 WP_017924249.1 RES family NAD+ phosphorylase Toxin
CG017_RS29025 (CG017_05707) 156151..156576 - 426 WP_017924250.1 DUF2384 domain-containing protein Antitoxin
CG017_RS29030 (CG017_05708) 156705..156899 - 195 WP_173941288.1 hypothetical protein -
CG017_RS29035 (CG017_05709) 157439..158485 + 1047 WP_173941289.1 hypothetical protein -
CG017_RS29040 (CG017_05710) 159344..160312 - 969 WP_035977658.1 ParB/RepB/Spo0J family partition protein -
CG017_RS29045 (CG017_05711) 160309..161517 - 1209 WP_035977654.1 AAA family ATPase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..185577 185577


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(11-168)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 178 a.a.        Molecular weight: 19131.69 Da        Isoelectric Point: 5.1753

>T80632 WP_017924249.1 NZ_CP023205:c156154-155621 [Burkholderia glumae]
MILTPLQDITAYRMHVPKWAVAPTSGAGAARAGGRANRVGTPALYLALEVATAVAEYQQLSPLLPPGTLVSYRVTATPVV
DFTGGFRADLWPPLWESFFCDWRRDWFNARIEPPSWVLGDEAIAAGAKGILFRSTQATGGTNLVLFVDQLGEGDRLDVHD
PAGALPRDQASWDGPSR

Download         Length: 534 bp

>T80632 NZ_CP023205:c156154-155621 [Burkholderia glumae]
ATGATCCTCACGCCGCTGCAGGACATTACCGCCTACCGCATGCACGTGCCCAAGTGGGCCGTGGCACCCACCAGTGGCGC
GGGTGCCGCCCGGGCCGGCGGCCGGGCGAACCGGGTTGGCACGCCGGCGCTGTATCTGGCGCTCGAGGTGGCCACCGCAG
TGGCCGAGTACCAGCAGCTGTCGCCGCTGCTGCCGCCCGGCACGCTGGTGAGCTATCGGGTCACGGCGACGCCCGTGGTC
GATTTCACCGGCGGCTTTCGCGCGGATCTCTGGCCGCCTTTGTGGGAATCCTTCTTCTGCGACTGGCGCCGCGACTGGTT
TAATGCGCGCATCGAGCCGCCCAGCTGGGTGCTGGGCGATGAGGCGATCGCCGCCGGCGCAAAAGGGATCCTGTTTCGGT
CGACGCAGGCCACCGGCGGCACGAACCTGGTGCTGTTCGTCGACCAGCTGGGGGAGGGCGATCGCCTGGATGTCCACGAC
CCAGCCGGCGCCTTGCCGCGTGATCAGGCTTCATGGGACGGCCCCTCGAGGTGA

Antitoxin


Download         Length: 142 a.a.        Molecular weight: 14935.78 Da        Isoelectric Point: 6.4664

>AT80632 WP_017924250.1 NZ_CP023205:c156576-156151 [Burkholderia glumae]
MSTLAATRAPAAPAGGPAPASFDAFLSALREPDTAAPVLSARRYVAALNIDLQTLADQAHVHRNTVARAPQSASVQQFLR
EAIRVIRAATDLSGDVQRALFWYRNEPLAVFDYQTAETLVSAGRADDVVRYVASLEAGAAG

Download         Length: 426 bp

>AT80632 NZ_CP023205:c156576-156151 [Burkholderia glumae]
ATGAGCACCCTCGCAGCCACCCGAGCACCCGCCGCGCCAGCCGGCGGCCCGGCCCCGGCAAGCTTTGATGCATTCCTGAG
TGCGTTGCGCGAGCCGGACACGGCAGCCCCGGTGCTGTCGGCCCGTCGCTACGTGGCGGCCCTCAACATCGACCTGCAGA
CGCTCGCCGACCAGGCTCACGTCCACCGCAACACCGTCGCCCGCGCGCCGCAGTCGGCCAGCGTCCAGCAGTTCCTGCGC
GAGGCGATCCGCGTGATCCGCGCCGCGACGGATCTGTCGGGCGACGTCCAGCGCGCGCTGTTCTGGTATCGCAACGAGCC
GCTGGCCGTGTTTGACTACCAGACGGCCGAAACCCTGGTGTCGGCCGGCCGCGCCGATGACGTGGTGCGCTATGTGGCGT
CGCTCGAGGCGGGCGCCGCCGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References