Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 1267616..1268182 Replicon chromosome
Accession NZ_CP023192
Organism Bifidobacterium breve strain NRBB08

Toxin (Protein)


Gene name relE Uniprot ID S2ZEY8
Locus tag NRBB08_RS05660 Protein ID WP_014483710.1
Coordinates 1267889..1268182 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A0L7C7C8
Locus tag NRBB08_RS05655 Protein ID WP_014483711.1
Coordinates 1267616..1267885 (+) Length 90 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NRBB08_RS05630 1263357..1264052 - 696 WP_052790767.1 response regulator transcription factor -
NRBB08_RS05635 1264178..1264693 + 516 WP_013140733.1 hypothetical protein -
NRBB08_RS05640 1264690..1265580 + 891 WP_007056280.1 hypothetical protein -
NRBB08_RS05645 1265577..1266265 + 689 Protein_1049 ABC transporter ATP-binding protein -
NRBB08_RS05650 1266262..1267431 + 1170 WP_106622626.1 ABC transporter permease -
NRBB08_RS05655 1267616..1267885 + 270 WP_014483711.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
NRBB08_RS05660 1267889..1268182 + 294 WP_014483710.1 type II toxin-antitoxin system YafQ family toxin Toxin
NRBB08_RS05670 1268851..1269402 + 552 WP_015438834.1 RNA polymerase sigma factor -
NRBB08_RS05675 1269436..1270263 + 828 WP_015438835.1 hypothetical protein -
NRBB08_RS05680 1270395..1271022 + 628 Protein_1055 hypothetical protein -
NRBB08_RS05685 1271019..1271801 + 783 WP_021649673.1 hypothetical protein -
NRBB08_RS05690 1271854..1272729 + 876 WP_021649674.1 ABC transporter ATP-binding protein -
NRBB08_RS05695 1272783..1273181 + 399 WP_016462921.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 1259935..1279909 19974


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-94)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(3-85)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11188.96 Da        Isoelectric Point: 9.7881

>T80614 WP_014483710.1 NZ_CP023192:1267889-1268182 [Bifidobacterium breve]
MLKPDYTAAFQRDIKKLKRKHADLRPLKEVIRLVLEDTADSKEVLRRRHRAHTLTGDLNGVLECHIGNAGDWLLLWIRDD
GTAMFMRTGSHDELLGK

Download         Length: 294 bp

>T80614 NZ_CP023192:1267889-1268182 [Bifidobacterium breve]
ATGCTCAAACCGGATTACACAGCGGCATTCCAGCGAGATATCAAGAAACTCAAACGCAAGCACGCTGATTTACGCCCGCT
GAAAGAAGTCATTCGTCTGGTTCTTGAGGACACGGCGGACTCCAAGGAAGTATTGAGGCGTAGGCATCGCGCCCACACAC
TTACCGGTGATTTAAACGGCGTACTGGAATGCCACATCGGCAATGCCGGCGACTGGCTGCTTCTATGGATTCGCGATGAT
GGTACCGCCATGTTCATGCGAACCGGCAGCCATGACGAACTGTTGGGCAAATAG

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9860.17 Da        Isoelectric Point: 4.7872

>AT80614 WP_014483711.1 NZ_CP023192:1267616-1267885 [Bifidobacterium breve]
VSMASVTVRVDADTKQKAANIAEDLGLDLSSVTRAFYKQIVRERRIPLNLSYTTVPPETMEALDEAKNRLADGKPRFNSA
DEMFDSLGI

Download         Length: 270 bp

>AT80614 NZ_CP023192:1267616-1267885 [Bifidobacterium breve]
GTGAGCATGGCATCCGTCACAGTCCGCGTGGATGCGGACACCAAGCAGAAAGCCGCAAACATAGCCGAGGATCTCGGTCT
GGACTTGTCTTCGGTCACCCGCGCCTTCTACAAGCAGATTGTCCGGGAGAGGCGCATTCCTCTAAACCTTTCCTATACGA
CCGTGCCGCCTGAAACCATGGAGGCCCTTGACGAGGCGAAAAACAGGCTCGCCGACGGCAAACCTCGTTTCAACAGTGCC
GATGAGATGTTCGATTCGTTGGGAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S2ZEY8

Antitoxin

Source ID Structure
AlphaFold DB A0A0L7C7C8

References