Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4827290..4827458 | Replicon | chromosome |
| Accession | NZ_CP023185 | ||
| Organism | Klebsiella michiganensis strain K518 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4827348..4827451 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4827290..4827458 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKQ55_RS23775 | 4822417..4824477 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| CKQ55_RS23780 | 4824484..4825143 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| CKQ55_RS23785 | 4825222..4825452 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| CKQ55_RS23790 | 4825588..4825962 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| CKQ55_RS23795 | 4825967..4826836 | + | 870 | WP_089046373.1 | copper homeostasis membrane protein CopD | - |
| CKQ55_RS23800 | 4826853..4827191 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 4827290..4827458 | - | 169 | - | - | Antitoxin |
| - | 4827348..4827451 | + | 104 | - | - | Toxin |
| CKQ55_RS23805 | 4827576..4828535 | - | 960 | WP_014229836.1 | spore coat U domain-containing protein | - |
| CKQ55_RS23810 | 4828550..4830880 | - | 2331 | WP_014838820.1 | fimbrial biogenesis outer membrane usher protein | - |
| CKQ55_RS23815 | 4830883..4831647 | - | 765 | WP_014229834.1 | molecular chaperone | - |
| CKQ55_RS23820 | 4831666..4832184 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80596 NZ_CP023185:4827348-4827451 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT80596 NZ_CP023185:c4827458-4827290 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
