Detailed information of TA system TA080472

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): cptAB/-
• Location: 465972..466625
• Replicon: chromosome
• Accession: NZ_CP023140
• Organism: Acinetobacter baumannii strain XH906

Toxin (Protein)

• Gene name: cptA
• Uniprot ID: -
• Locus tag: CK824_RS02300
• Protein ID: WP_000607077.1
• Coordinates: 466236..466625 (+)
• Length: 130 a.a.

Antitoxin (Protein)

• Gene name: cptB
• Uniprot ID: V5V966
• Locus tag: CK824_RS02295
• Protein ID: WP_001288210.1
• Coordinates: 465972..466229 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CK824_RS02275	461488..462495	+	1008	WP_000198631.1	DNA-directed RNA polymerase subunit alpha	-
CK824_RS02280	462514..462891	+	378	WP_001216380.1	50S ribosomal protein L17	-
CK824_RS02285	463073..464563	+	1491	WP_000415125.1	NAD(P)/FAD-dependent oxidoreductase	-
CK824_RS02290	464612..465784	-	1173	WP_001190542.1	acyl-CoA dehydrogenase family protein	-
CK824_RS02295	465972..466229	+	258	WP_001288210.1	succinate dehydrogenase assembly factor 2	Antitoxin
CK824_RS02300	466236..466625	+	390	WP_000607077.1	membrane protein	Toxin
CK824_RS02305	467395..468480	+	1086	WP_000049106.1	hypothetical protein	-
CK824_RS02310	468558..469124	+	567	WP_000651538.1	rhombosortase	-
CK824_RS02315	469312..471507	+	2196	WP_001158906.1	TRAP transporter large permease subunit	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Flavinator of succinate dehydrogenase (10-82)

Sequences

Toxin

Protein

• Length: 130 a.a.
• Molecular weight: 15552.88 Da
• Isoelectric Point: 10.4313

>T80472 WP_000607077.1 NZ_CP023140:466236-466625 [Acinetobacter baumannii]
MINHLNFKLKYSRFSIIFQFFIGLSLAVLFYQLMPLLWWLVVISLLFISFIFFLKRPQLAQIAYLDKKLWSLAYKSQNTV
SRVKILKIIDCQIFIVIYFEGHKTLTSIIWFDQMSLAEWKKLKTLEKLY

Nucleotide

• Length: 390 bp

>T80472 NZ_CP023140:466236-466625 [Acinetobacter baumannii]
TTGATCAACCATTTGAATTTTAAGCTGAAATATAGTCGTTTTTCGATTATATTTCAGTTTTTTATTGGCTTAAGCTTAGC
AGTTCTATTTTATCAATTAATGCCGTTACTATGGTGGTTAGTTGTAATCAGCTTACTATTTATCAGCTTTATTTTCTTTT
TAAAGCGTCCGCAGCTTGCACAAATTGCTTATTTAGATAAAAAACTATGGTCGCTTGCTTATAAGTCACAGAACACCGTT
TCTCGCGTCAAAATTTTAAAAATAATTGATTGTCAGATTTTCATAGTGATCTATTTTGAAGGTCATAAAACACTAACTTC
TATCATTTGGTTTGATCAAATGTCATTAGCAGAGTGGAAAAAGCTTAAAACTTTAGAAAAACTCTATTAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 10318.77 Da
• Isoelectric Point: 4.6150

>AT80472 WP_001288210.1 NZ_CP023140:465972-466229 [Acinetobacter baumannii]
MSEEMTLEERKVIYRARRGLKEIDVYFDPYVKNYYLKADPAEKALFAELVEQEDPDLLDWFMEVSEPPRTELRDFIYKLK
HYVHG

Nucleotide

• Length: 258 bp

>AT80472 NZ_CP023140:465972-466229 [Acinetobacter baumannii]
ATGTCTGAAGAAATGACCTTGGAAGAACGTAAAGTAATCTATCGCGCACGTCGTGGTTTAAAGGAAATTGATGTCTATTT
TGACCCTTATGTGAAAAATTATTATTTAAAGGCAGACCCGGCAGAAAAAGCGTTGTTTGCTGAGTTGGTAGAACAGGAAG
ACCCTGATTTACTAGATTGGTTTATGGAAGTATCAGAACCACCACGTACCGAATTACGTGACTTTATCTATAAATTAAAA
CACTATGTTCATGGTTAA

Structures

Antitoxin

• AlphaFold DB: A0A7U4BQM7