Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2193655..2193926 | Replicon | chromosome |
| Accession | NZ_CP023061 | ||
| Organism | Escherichia coli strain FORC_069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2193785..2193888 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2193655..2193926 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC69_RS11415 | 2190210..2190872 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FORC69_RS11420 | 2190896..2191552 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FORC69_RS11425 | 2191654..2191884 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FORC69_RS11430 | 2192023..2192397 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FORC69_RS11435 | 2192401..2193273 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FORC69_RS11440 | 2193286..2193627 | + | 342 | WP_088888690.1 | YebY family protein | - |
| - | 2193655..2193926 | - | 272 | - | - | Antitoxin |
| - | 2193785..2193888 | + | 104 | - | - | Toxin |
| FORC69_RS11445 | 2194023..2194679 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| FORC69_RS11450 | 2194680..2194871 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FORC69_RS11455 | 2194976..2195212 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FORC69_RS11460 | 2195330..2196769 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2115920..2209765 | 93845 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80416 NZ_CP023061:2193785-2193888 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80416 NZ_CP023061:c2193926-2193655 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
