Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 263061..263206 | Replicon | chromosome |
| Accession | NZ_CP022997 | ||
| Organism | Klebsiella pneumoniae strain 721005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 263097..263199 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 263061..263206 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CI946_RS01195 | 258191..260251 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CI946_RS01200 | 260255..260914 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CI946_RS01205 | 260993..261223 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CI946_RS01210 | 261336..261710 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CI946_RS01215 | 261714..262583 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CI946_RS01220 | 262600..262938 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 263061..263206 | - | 146 | - | - | Antitoxin |
| - | 263097..263199 | + | 103 | - | - | Toxin |
| CI946_RS27750 | 263574..263717 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CI946_RS01230 | 263822..264790 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CI946_RS01235 | 264947..265600 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CI946_RS01240 | 265597..265788 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CI946_RS01245 | 265886..266125 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CI946_RS01250 | 266241..267674 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T80297 NZ_CP022997:263097-263199 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT80297 NZ_CP022997:c263206-263061 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
