Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992574..1992845 | Replicon | chromosome |
| Accession | NZ_CP022959 | ||
| Organism | Escherichia coli ATCC 8739 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992704..1992807 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992574..1992845 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJZ69_RS09750 | 1989129..1989791 | - | 663 | WP_000944242.1 | exodeoxyribonuclease X | - |
| CJZ69_RS09755 | 1989815..1990471 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CJZ69_RS09760 | 1990573..1990803 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CJZ69_RS09765 | 1990942..1991316 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| CJZ69_RS09770 | 1991320..1992192 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CJZ69_RS09775 | 1992205..1992546 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1992574..1992845 | - | 272 | - | - | Antitoxin |
| - | 1992704..1992807 | + | 104 | - | - | Toxin |
| CJZ69_RS09780 | 1992942..1993598 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| CJZ69_RS09785 | 1993599..1993790 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CJZ69_RS09790 | 1993895..1994131 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CJZ69_RS09795 | 1994249..1995688 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80256 NZ_CP022959:1992704-1992807 [Escherichia coli ATCC 8739]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80256 NZ_CP022959:c1992845-1992574 [Escherichia coli ATCC 8739]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
