Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5246008..5246633 Replicon chromosome
Accession NZ_CP022922
Organism Klebsiella pneumoniae strain ST307PT02

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag CJ259_RS26020 Protein ID WP_002882817.1
Coordinates 5246008..5246391 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag CJ259_RS26025 Protein ID WP_004150355.1
Coordinates 5246391..5246633 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CJ259_RS26005 5243374..5244276 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
CJ259_RS26010 5244273..5244908 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
CJ259_RS26015 5244905..5245834 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
CJ259_RS26020 5246008..5246391 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
CJ259_RS26025 5246391..5246633 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
CJ259_RS26030 5246838..5247755 + 918 WP_009484979.1 alpha/beta hydrolase -
CJ259_RS26035 5247769..5248710 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
CJ259_RS26040 5248755..5249192 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
CJ259_RS26045 5249189..5250049 - 861 WP_004146232.1 virulence factor BrkB family protein -
CJ259_RS26050 5250043..5250642 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T80219 WP_002882817.1 NZ_CP022922:c5246391-5246008 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T80219 NZ_CP022922:c5246391-5246008 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT80219 WP_004150355.1 NZ_CP022922:c5246633-5246391 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT80219 NZ_CP022922:c5246633-5246391 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References