Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1959415..1959560 | Replicon | chromosome |
| Accession | NZ_CP022916 | ||
| Organism | Klebsiella pneumoniae strain ST307PT04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1959451..1959553 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1959415..1959560 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJ257_RS09775 | 1954545..1956605 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| CJ257_RS09780 | 1956609..1957268 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| CJ257_RS09785 | 1957347..1957577 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CJ257_RS09790 | 1957690..1958064 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CJ257_RS09795 | 1958068..1958937 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| CJ257_RS09800 | 1958954..1959292 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1959415..1959560 | - | 146 | - | - | Antitoxin |
| - | 1959451..1959553 | + | 103 | - | - | Toxin |
| CJ257_RS28325 | 1959928..1960071 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CJ257_RS09810 | 1960176..1961144 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CJ257_RS09815 | 1961301..1961954 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| CJ257_RS09820 | 1961951..1962142 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CJ257_RS09825 | 1962240..1962479 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CJ257_RS09830 | 1962595..1964028 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T80162 NZ_CP022916:1959451-1959553 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT80162 NZ_CP022916:c1959560-1959415 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
