80156

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 142341..142906 Replicon chromosome
Accession NZ_CP022915
Organism Rhodococcus pyridinivorans strain GF3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CJU69_RS00665 Protein ID WP_024102981.1
Coordinates 142341..142619 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CJU69_RS00670 Protein ID WP_006551856.1
Coordinates 142616..142906 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CJU69_RS00635 137459..138178 + 720 WP_019290045.1 2OG-Fe(II) oxygenase -
CJU69_RS00640 138215..139186 - 972 WP_006551850.1 phosphotriesterase -
CJU69_RS00645 139231..140061 - 831 WP_094979475.1 SDR family oxidoreductase -
CJU69_RS00650 140182..140844 + 663 WP_094979476.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
CJU69_RS00655 140994..141746 + 753 WP_064060432.1 cutinase family protein -
CJU69_RS00660 141805..142284 + 480 WP_006551854.1 MarR family transcriptional regulator -
CJU69_RS00665 142341..142619 - 279 WP_024102981.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CJU69_RS00670 142616..142906 - 291 WP_006551856.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CJU69_RS00675 143120..143938 - 819 WP_094979477.1 bacteriocin family protein -
CJU69_RS00680 143935..144963 - 1029 WP_024102977.1 Dyp-type peroxidase -
CJU69_RS00685 145040..146641 - 1602 WP_094979478.1 L-lactate permease -
CJU69_RS00690 146646..147074 - 429 WP_094979479.1 HIT family protein -
CJU69_RS00695 147071..147673 - 603 WP_019290064.1 TetR/AcrR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(34-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-73)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10268.82 Da        Isoelectric Point: 10.2002

>T80156 WP_024102981.1 NZ_CP022915:c142619-142341 [Rhodococcus pyridinivorans]
MSTPDHPYRLVMARSAARAMARSLPEKVATAVYEFVTGPLLENPKRVGKPLNPPLAPAYSARRGEYRVLYLIDDANRTVE
VTAISHRADAYR

Download         Length: 279 bp

>T80156 NZ_CP022915:c142619-142341 [Rhodococcus pyridinivorans]
ATGAGCACTCCGGACCACCCGTATCGGCTGGTGATGGCGAGGTCGGCTGCACGCGCCATGGCGAGGTCGTTGCCGGAGAA
AGTAGCAACTGCGGTATACGAGTTCGTCACAGGACCCCTTCTCGAGAATCCGAAGCGGGTGGGGAAGCCGTTGAATCCGC
CTCTTGCGCCGGCGTACAGCGCCCGGCGAGGTGAATATCGCGTCCTGTATCTGATCGATGATGCGAACCGCACGGTCGAG
GTCACCGCGATCTCGCACCGTGCCGATGCGTATCGATAG

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10788.92 Da        Isoelectric Point: 4.2336

>AT80156 WP_006551856.1 NZ_CP022915:c142906-142616 [Rhodococcus pyridinivorans]
MYMTTLPVADARAQLSRLVDEAERTHERFEITRNGHRAAVLLGADDYDAMQETIAVLSDTDLLRAHVEGRTEVESGDVVD
VQELTQLMRDARSSEE

Download         Length: 291 bp

>AT80156 NZ_CP022915:c142906-142616 [Rhodococcus pyridinivorans]
ATGTACATGACGACTCTTCCTGTTGCCGACGCGCGGGCGCAATTGTCACGACTGGTCGATGAGGCCGAGCGCACACACGA
GCGATTCGAGATCACCCGCAACGGGCACCGCGCCGCGGTGCTTCTCGGTGCCGACGATTACGACGCGATGCAGGAGACGA
TCGCGGTGTTGTCGGATACGGATCTGCTGCGGGCGCACGTCGAGGGCCGAACGGAGGTCGAGTCGGGAGACGTCGTCGAT
GTACAGGAATTGACGCAGCTGATGCGTGATGCTCGGTCGTCCGAGGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References