Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 928034..928868 | Replicon | chromosome |
| Accession | NZ_CP022912 | ||
| Organism | Escherichia coli O6:H16 strain 2011EL-1370-2 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | CJZ79_RS04915 | Protein ID | WP_140159973.1 |
| Coordinates | 928034..928402 (-) | Length | 123 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | CJZ79_RS04920 | Protein ID | WP_001285580.1 |
| Coordinates | 928500..928868 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJZ79_RS04890 | 923160..924308 | - | 1149 | WP_000905925.1 | capsule polysaccharide transporter | - |
| CJZ79_RS04895 | 924380..925363 | - | 984 | WP_001355482.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| CJZ79_RS04900 | 926175..926345 | - | 171 | Protein_894 | IS110 family transposase | - |
| CJZ79_RS04905 | 926688..927530 | - | 843 | WP_001280493.1 | DUF4942 domain-containing protein | - |
| CJZ79_RS04910 | 927615..927812 | - | 198 | WP_023563519.1 | DUF957 domain-containing protein | - |
| CJZ79_RS26460 | 927888..928037 | - | 150 | Protein_897 | hypothetical protein | - |
| CJZ79_RS04915 | 928034..928402 | - | 369 | WP_140159973.1 | TA system toxin CbtA family protein | Toxin |
| CJZ79_RS04920 | 928500..928868 | - | 369 | WP_001285580.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| CJZ79_RS04925 | 928947..929168 | - | 222 | WP_000691818.1 | DUF987 domain-containing protein | - |
| CJZ79_RS04935 | 929305..929484 | - | 180 | WP_047646086.1 | hypothetical protein | - |
| CJZ79_RS04940 | 929526..930223 | + | 698 | Protein_902 | IS1 family transposase | - |
| CJZ79_RS04950 | 931032..931256 | + | 225 | WP_001395295.1 | transposase | - |
| CJZ79_RS04955 | 931258..931389 | - | 132 | Protein_904 | IS3 family transposase | - |
| CJZ79_RS04960 | 931421..932992 | - | 1572 | WP_000381401.1 | IS66 family transposase | - |
| CJZ79_RS04965 | 933012..933359 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | gspC / gspD / gspE / gspF / gspG / gspH / gspI / gspJ / gspK / gspL / gspM / kpsM / kpsT / kpsC / kpsU / kpsD / kpsE / kpsF | 871690..929509 | 57819 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 123 a.a. Molecular weight: 13616.51 Da Isoelectric Point: 9.1652
>T80132 WP_140159973.1 NZ_CP022912:c928402-928034 [Escherichia coli O6:H16]
ITQHTRTGGIARPSPVTIWQTLLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVSFLVEKYALVRTDQPGFSAC
TRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
ITQHTRTGGIARPSPVTIWQTLLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVSFLVEKYALVRTDQPGFSAC
TRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
Download Length: 369 bp
>T80132 NZ_CP022912:c928402-928034 [Escherichia coli O6:H16]
ATTACCCAACACACACGTACGGGAGGCATCGCGCGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTGTCCCGGTTGCT
GGACCAGCATTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTGAAGCTGGCA
TTTCACTGTGTGATGCGGTGAGCTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTCAGCGCCTGT
ACCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGACAACTACAG
AACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATTACCCAACACACACGTACGGGAGGCATCGCGCGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTGTCCCGGTTGCT
GGACCAGCATTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTGAAGCTGGCA
TTTCACTGTGTGATGCGGTGAGCTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTCAGCGCCTGT
ACCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGACAACTACAG
AACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13670.43 Da Isoelectric Point: 6.9462
>AT80132 WP_001285580.1 NZ_CP022912:c928868-928500 [Escherichia coli O6:H16]
VSDTLPGTTHPDNNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLTDRAGIRGRFSDADSYHLNQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTFGSCGYVYLAVYPTPETKK
VSDTLPGTTHPDNNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLTDRAGIRGRFSDADSYHLNQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTFGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT80132 NZ_CP022912:c928868-928500 [Escherichia coli O6:H16]
GTGTCAGACACACTGCCCGGGACAACGCATCCCGACAACAACAACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTACAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATTCGTACCACCTGAACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAAGGGCTGACCTGCGAAGCCGACACCTTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACACTGCCCGGGACAACGCATCCCGACAACAACAACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTACAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATTCGTACCACCTGAACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAAGGGCTGACCTGCGAAGCCGACACCTTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|